Locus 7058

Sequence ID 3R_DroMel_CAF1
Location 18,645,462 – 18,645,559
Length 97
Max. P 0.587749
window11429

overview

Window 9

Location 18,645,462 – 18,645,559
Length 97
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.59
Mean single sequence MFE -19.47
Consensus MFE -9.85
Energy contribution -10.72
Covariance contribution 0.86
Combinations/Pair 1.07
Mean z-score -1.96
Structure conservation index 0.51
SVM decision value 0.11
SVM RNA-class probability 0.587749
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18645462 97 + 27905053
UUCCCCCCCUUUUUUUUGC-AGCCCCUCCCCCUUCACCCCGCCGAUCAACAAUCGCGUGCAUUUCAUUUGCAUUCGGA-AUGCGCACAGCAGCAAGUUU
..............(((((-.((.................((.(((.....)))))(((((((((..........)))-))))))...)).)))))... ( -19.30)
>DroSec_CAF1 74786 91 + 1
UUCCC-CCCUUUUUUUUGC-AGCCCC----CCG-CCCACCGUCGAUCAACAAUCGCGUGCAUUUCAUUUGCAUUCGCA-AUGCGCGCAGCAGCAAGUUU
.....-........(((((-.((...----...-.........(((.....)))((((((((......(((....)))-)))))))).)).)))))... ( -20.40)
>DroSim_CAF1 71827 94 + 1
UUCCC--CCUUUUUUUUGC-AGCCCCACCACCG-CCCACCGUCGAUCAACAAUCGCGUGCAUUUCAUUUGCAUUCGCA-AUGCGCGCAGCAGCAAGUUU
.....--.......(((((-.((..........-.........(((.....)))((((((((......(((....)))-)))))))).)).)))))... ( -20.40)
>DroEre_CAF1 73007 83 + 1
UUCCC--CCUU-UUUUUCC-AGCUCC----CCG-C------CCGAUCAACAAUCGCGUGCAUUUCAUUUGCAUUUCGA-AUGCGCGCAGCAGCAAGUUU
.....--....-.......-.(((..----..(-(------..(((.....)))((((((((((.(........).))-)))))))).)))))...... ( -17.50)
>DroYak_CAF1 74139 85 + 1
UUCCC--CCUU-UUUUUGCGAGUCCC----CCC-A------CCGAUCAACAAUCGCGUGCAUUUCAUUUGCAUUUGGAAAAGCGCGCAGCAGCAAGUUU
.....--....-..(((((.......----...-.------..(((.....)))((((((.(((((........)))))..))))))....)))))... ( -17.90)
>DroPer_CAF1 85114 82 + 1
GCCUC--CCUUU----------CCCCCCCCCCC-CCACCCCUUGAUCAACAAUCGCGUGCAUUUCAUUUGCAUUUGGA-AUGCGGGCG---GCAACUUU
(((.(--((...----------...........-.........(((.....)))....((((((((........))))-))))))).)---))...... ( -21.30)
>consensus
UUCCC__CCUUUUUUUUGC_AGCCCC____CCG_CCC_CCGCCGAUCAACAAUCGCGUGCAUUUCAUUUGCAUUCGGA_AUGCGCGCAGCAGCAAGUUU
.....................((....................(((.....)))((((((((.((...........)).))))))))....))...... ( -9.85 = -10.72 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:30 2006