Locus 7056

Sequence ID 3R_DroMel_CAF1
Location 18,637,476 – 18,637,577
Length 101
Max. P 0.605697
window11426

overview

Window 6

Location 18,637,476 – 18,637,577
Length 101
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 79.08
Mean single sequence MFE -24.76
Consensus MFE -11.62
Energy contribution -12.42
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.47
SVM decision value 0.15
SVM RNA-class probability 0.605697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18637476 101 + 27905053
GGUGUGGGG-GAAGUGGCAUUGGUGGAUGUGGGGG-GUGUUGAGUGAGUAAAAAGCGUCAACAGCACC----AGAC--ACUGGCAAAAAGCCGGCAAAAGCAAAACAAA
(((((....-....(.(((((....))))).)..(-((((((..(((((.....)).))).)))))))----..))--)))(((.....))).((....))........ ( -25.00)
>DroSec_CAF1 66767 95 + 1
GGUGUGGGGUGAACUGG---------GUGU--UGG-GUGUUGAGUGAGUAAAAAGCGUCAACAGCACCAGGCAGAC--ACUGGCAAAAAGCCGGCAAAAGCAAAACAAA
..(((...((....((.---------.(((--..(-((((((..(((((.....)).))).)))))))..)))..)--)(((((.....))))).....))...))).. ( -27.70)
>DroSim_CAF1 63448 96 + 1
GGUGUGGGGAGAAGUGG---------GUGU--UGGUGUGUUGAGUGAGUAAAAAGCGUCACCCUAACUAGGCAGAC--ACUGGCAAAAAGCCGGCAAAAGCAAAACAAA
..(((.((.....((.(---------((((--(.((.(((((.((((((.....)).))))..)))).).)).)))--))).))......)).)))............. ( -23.20)
>DroEre_CAF1 64849 95 + 1
--UUUGGGGGGAGGUGC------UGAAGGUGCGGG-GUGUUGAGUGAGUCAAAAGCGUCAACAGCACC----AGACACACUGGCAA-AAGCCGACAAAAGCAAAACAAA
--((((..((....(((------(...((((.(.(-((((((..(((((.....)).))).)))))))----...).)))))))).-...))..))))........... ( -26.50)
>DroYak_CAF1 65824 91 + 1
-------GUGGAAGUGGAA----GGAAUGUAUGGG-GUGUUGAGUGAGUCAAAAGCGUCAACAGCACC----AGAC--ACUGGCAAAAAGCCGGCAAAAGCAAAACAAA
-------((.....((...----....(((.((((-.((((((((.........)).)))))).).))----).))--)(((((.....)))))))...))........ ( -21.40)
>consensus
GGUGUGGGGGGAAGUGG_______G_AUGU__GGG_GUGUUGAGUGAGUAAAAAGCGUCAACAGCACC____AGAC__ACUGGCAAAAAGCCGGCAAAAGCAAAACAAA
....................................((((((..(((((.....)).))).))))))............(((((.....)))))............... (-11.62 = -12.42 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:27 2006