| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,636,792 – 18,636,882 |
| Length | 90 |
| Max. P | 0.999474 |
| Location | 18,636,792 – 18,636,882 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 66.79 |
| Mean single sequence MFE | -16.57 |
| Consensus MFE | -9.80 |
| Energy contribution | -9.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.59 |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.993497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18636792 90 + 27905053 ---CUUAUGCUUUUGCUUUUGCUUCGCUACU-GCUUUUGCUUUGCUUUUGCAGCAUUGUCUAUCCUGACACCAAGAUGACAAUUCUCCAGGCAA ---....(((((.((((...((...((....-((....))...))....))))))(((((.(((.((....)).))))))))......))))). ( -18.30) >DroSim_CAF1 62788 73 + 1 ---CUUCUGCUUUUGCUUU------------------UGCUUUGCUUUUGCAGCAUUGUCUAUCCUGACACCAAGAUGACAAUUCUCCAGGCAA ---.....((....))..(------------------((((((((....)))(.((((((.(((.((....)).))))))))).)...)))))) ( -15.20) >DroAna_CAF1 61681 83 + 1 UUGCUGCAGCUUCAACUUC------AGUCCUAG-----CAUCAGAAUCUGCCUCAUUGUCUUUUCUGACACCGAGAUGACAAUUCUCUAAGCAA .((((((((.(((......------........-----.....))).))))...((((((.((((.......)))).))))))......)))). ( -16.21) >consensus ___CUUCUGCUUUUGCUUU________U_CU_G____UGCUUUGCUUUUGCAGCAUUGUCUAUCCUGACACCAAGAUGACAAUUCUCCAGGCAA ........((((...............................(((.....)))((((((.(((.((....)).))))))))).....)))).. ( -9.80 = -9.37 + -0.44)
| Location | 18,636,792 – 18,636,882 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 66.79 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -11.69 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.55 |
| SVM decision value | 3.63 |
| SVM RNA-class probability | 0.999474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18636792 90 - 27905053 UUGCCUGGAGAAUUGUCAUCUUGGUGUCAGGAUAGACAAUGCUGCAAAAGCAAAGCAAAAGC-AGUAGCGAAGCAAAAGCAAAAGCAUAAG--- ((((.((.((.((((((((((((....)))))).)))))).)).))...)))).((....((-....))...((....))....)).....--- ( -23.30) >DroSim_CAF1 62788 73 - 1 UUGCCUGGAGAAUUGUCAUCUUGGUGUCAGGAUAGACAAUGCUGCAAAAGCAAAGCA------------------AAAGCAAAAGCAGAAG--- ((((.((.((.((((((((((((....)))))).)))))).)).))...)))).((.------------------...))...........--- ( -19.50) >DroAna_CAF1 61681 83 - 1 UUGCUUAGAGAAUUGUCAUCUCGGUGUCAGAAAAGACAAUGAGGCAGAUUCUGAUG-----CUAGGACU------GAAGUUGAAGCUGCAGCAA .((((...((((((....(((((.((((......)))).)))))..))))))...(-----((..(((.------...)))..)))...)))). ( -21.20) >consensus UUGCCUGGAGAAUUGUCAUCUUGGUGUCAGGAUAGACAAUGCUGCAAAAGCAAAGCA____C_AG_A________AAAGCAAAAGCAGAAG___ ((((.......((((((((((((....)))))).))))))(((.....)))...........................))))............ (-11.69 = -11.70 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:26 2006