Locus 7054

Sequence ID 3R_DroMel_CAF1
Location 18,635,043 – 18,635,145
Length 102
Max. P 0.564433
window11423

overview

Window 3

Location 18,635,043 – 18,635,145
Length 102
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 77.34
Mean single sequence MFE -31.32
Consensus MFE -19.96
Energy contribution -21.58
Covariance contribution 1.62
Combinations/Pair 1.13
Mean z-score -1.55
Structure conservation index 0.64
SVM decision value 0.06
SVM RNA-class probability 0.564433
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18635043 102 + 27905053
AUGGCUAUAUAAUGGGAAUGCGAAUUUUUAUUGUGG-CCACAAUGGCUGGACG--------GAUGGA-CGGACGGCCGAGCCUUAGCUUCGUUCGGGUAAUAUUAGAAGGAC-
.((((((((..((((((((....)))))))))))))-)))...((((((..((--------......-))..)))))).((((.(((...))).))))..............- ( -31.30)
>DroSim_CAF1 61007 110 + 1
AUGGCUAUAUAAUGGGAAUGCGAAUUUUUAUUGUGG-CCACAAUGGCUGGACGGAUGGUCGGAUGGA-CGGACGGCCGAGCCUUGGCUUCGUCCUGGUAAUAUUAGGAGGAC-
.((((((((..((((((((....)))))))))))))-)))...((((((..((..((......))..-))..))))))(((....)))((.(((((((...))))))).)).- ( -37.40)
>DroEre_CAF1 62517 95 + 1
AUGGCUAUAUAAUGGGAAUGCGAAUUUUUAUUGUGG-CCACAAUGGCUGGAC-----------------GGACGGCCGAGCCUUGGCUUCGUCCUGGCAAUAUUAGGAGGACU
.((((((((..((((((((....)))))))))))))-)))...((((((...-----------------...))))))(((....)))((.((((((.....)))))).)).. ( -32.40)
>DroYak_CAF1 63276 94 + 1
AUGGCUAUAUAAUGGGAAUGCGAAUUUUUAUUGUGG-CCACAAUGGCUGGAC-----------------GGACGGCCGAGUCCCGGCUUCGUCCUGGCAAUAUUAGGAGGAC-
.((((((((..((((((((....)))))))))))))-))).....(((((((-----------------((..(((((.....))))))))))).)))..............- ( -32.90)
>DroAna_CAF1 59792 103 + 1
AUGUCUAUAUAAUGGGAAUACGAAUUUUUAUUGUUGCCCACAAUGGCUGGCUG-AGAGUCCACUCCACCCCACAGCC--------GCUCUUCUCUGGUAAUACUAGCAGCUC-
............((((...((((.......))))..))))....(((((..((-.(((....))))).....)))))--------(((.....((((.....)))).)))..- ( -22.60)
>consensus
AUGGCUAUAUAAUGGGAAUGCGAAUUUUUAUUGUGG_CCACAAUGGCUGGACG__________U__A_CGGACGGCCGAGCCUUGGCUUCGUCCUGGUAAUAUUAGGAGGAC_
..((((.((((((((((((....)))))))))))).........(((((..((...............))..))))).))))......((.((((((.....)))))).)).. (-19.96 = -21.58 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:24 2006