Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,634,900 – 18,634,994 |
Length | 94 |
Max. P | 0.645406 |
Location | 18,634,900 – 18,634,994 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 67.81 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -10.25 |
Energy contribution | -11.38 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.71 |
Structure conservation index | 0.48 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18634900 94 - 27905053 GAGUUACGGAUGUGAGCUUACACAGAGAAAGAAUUCGGUAAAAGUGGGUUUUCUGUGGUUUUCUA-----------------UGACAGCACAGCUAAAUUAAAUAUUAUGA ..((((..((...((((...(((((((((...(((.......)))...)))))))))))))))..-----------------))))(((...)))................ ( -15.80) >DroSec_CAF1 64200 77 - 1 GAGUUACGGAUGUGGGCGUACACAGAGAAAGAUUUCGGUAGGAGUGGGUUUUCUGUGAA---AUA-----------------UGACAGCAU------AUCUAA-------- .......(((((((.((((((((((((((..(((((....)))))...)))))))))..---.))-----------------)).)..)))------))))..-------- ( -22.30) >DroSim_CAF1 60881 77 - 1 GAGUUACGGAUGUGGGCGUACACAGAGAAAGAUUUCGGUAGGAGUGGGUUUUCUGUGGA---AUA-----------------UGACAGCAU------AUCUAA-------- .......(((((((.((((((((((((((..(((((....)))))...)))))))))..---.))-----------------)).)..)))------))))..-------- ( -22.30) >DroEre_CAF1 62334 103 - 1 GCGUUACGGAUGUGGGCGUACACAGAGAAAAAUGCUGAG-AGAGUGGCAGUUCUUUGGA---AUAUUUAAAAUGGGUCUACAUGACAGCAUUUCUAAAUUAAAUGC----A ..(((....((((((((.((..(((((((...((((...-.....)))).)))))))..---..........)).))))))))))).((((((.......))))))----. ( -24.54) >consensus GAGUUACGGAUGUGGGCGUACACAGAGAAAGAUUUCGGUAAGAGUGGGUUUUCUGUGGA___AUA_________________UGACAGCAU______AUCAAA________ ..((((...(((....))).(((((((((..(((((....)))))...))))))))).........................))))......................... (-10.25 = -11.38 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:23 2006