Locus 7052

Sequence ID 3R_DroMel_CAF1
Location 18,626,076 – 18,626,166
Length 90
Max. P 0.978908
window11421

overview

Window 1

Location 18,626,076 – 18,626,166
Length 90
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 88.43
Mean single sequence MFE -19.98
Consensus MFE -15.43
Energy contribution -15.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.26
Structure conservation index 0.77
SVM decision value 1.82
SVM RNA-class probability 0.978908
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18626076 90 + 27905053
CAACAGCCACCGGAAACGGAAGCGCACAACUCUUUGCGCGAAUUAAUCACACAGC---AACUACAACUACA-----UGUACAAC---UACGAGUACAAGUA-
.....((..(((....)))..(((((........)))))..............))---.........(((.-----(((((...---.....))))).)))- ( -22.30)
>DroSec_CAF1 55289 91 + 1
CAACAGCCACCGGAAACGGAAGCGCACAACUCUUUGCGCGAAUUAAUCACACAGC---AACUACAACUACA-----AGUACAAC---UACGAGUACAACUAC
.....((..(((....)))..(((((........)))))..............))---.............-----.((((...---.....))))...... ( -20.10)
>DroSim_CAF1 52086 94 + 1
CAACAGCCACCGGAAACGGAAGCGCACAACUCUUUGCGCGAAUUAAUCACACAGC---AACUACAACUACA-----AGUACAACUACUACGAGUACAACUAC
.....((..(((....)))..(((((........)))))..............))---.......(((...-----((((....))))...)))........ ( -19.30)
>DroAna_CAF1 50508 99 + 1
CAACAGCAACCGGAAACGGAAGCGCACAACUCUUUGCGCGAAUUAAUCACACAGCUACAACUAAAACUACACAGCAACUACAUC---AAUGAGAACAAGUCC
....(((..(((....)))..(((((........)))))..............)))............................---............... ( -18.20)
>consensus
CAACAGCCACCGGAAACGGAAGCGCACAACUCUUUGCGCGAAUUAAUCACACAGC___AACUACAACUACA_____AGUACAAC___UACGAGUACAACUAC
.....((..(((....)))..(((((........)))))..............))............................................... (-15.43 = -15.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:22 2006