Locus 7051

Sequence ID	3R_DroMel_CAF1
Location	18,625,645 – 18,625,754
Length	109
Max. P	0.999033

overview

Window 9

Location	18,625,645 – 18,625,754
Length	109
Sequences	6
Columns	110
Reading direction	forward
Mean pairwise identity	97.26
Mean single sequence MFE	-27.82
Consensus MFE	-27.27
Energy contribution	-27.44
Covariance contribution	0.17
Combinations/Pair	1.00
Mean z-score	-1.78
Structure conservation index	0.98
SVM decision value	3.34
SVM RNA-class probability	0.999033
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18625645 109 + 27905053
CGACUAACUAAUUAAGAUAAGUGUGUCUGAUUUUCAUAUUAAUGGCAUACAAACGAAACCAUUGUGGCGCUCUUAUCUUAAAUGUUUGG-GGCCAAGCUGAAGCGUCAAA
.(((.......((((((((((.(((((((.....))...((((((.............)))))).))))).))))))))))..(((((.-...)))))......)))... ( -28.32)
>DroSec_CAF1 54867 109 + 1
CGACUAACUAAUUAAGAUAAGUGUGUCUGAUUUUCAUAUUAAUGGCAUACAAACGAACCCAUUGUGGCGCUCUUAUCUUAAAUGUUUGG-GGCCAAGCUGACGCGUCAAA
.(((.......((((((((((.(((((((.....))...((((((.............)))))).))))).))))))))))..(((((.-...)))))......)))... ( -27.92)
>DroSim_CAF1 51659 109 + 1
CGACUAACUAAUUAAGAUAAGUGUGUCUGAUUUUCAUAUUAAUGGCAUACAAACGAACCCAUUGUGGCGCUCUUAUCUUAAAUGUUUGG-GGCCAAGCUGAAGCGUCAAA
.(((.......((((((((((.(((((((.....))...((((((.............)))))).))))).))))))))))..(((((.-...)))))......)))... ( -27.92)
>DroEre_CAF1 52657 109 + 1
CGACUAACUAAUUAAGAUAAGUGUGUCUGAUUUUCAUAUUAAUGGCAUACAAACGAACCCAUUGUGGCGCUCUUAUCUUAAAUGUUUGG-GGCCAAGCUGAAGCGUCCAA
.(((.......((((((((((.(((((((.....))...((((((.............)))))).))))).))))))))))..(((((.-...)))))......)))... ( -27.02)
>DroYak_CAF1 52873 109 + 1
CGACUAACUAAUUAAGAUAAGUGUGUCUGAUUUUCAUAUUAAUGGCAUACAAACGAACCCAUUGUGGCGCUCUUAUCUUAAAUGUUUGG-GGCCAAGCUGAAGCGUCAAA
.(((.......((((((((((.(((((((.....))...((((((.............)))))).))))).))))))))))..(((((.-...)))))......)))... ( -27.92)
>DroAna_CAF1 50030 110 + 1
CGACUAACUAAUUAAGAUAAGUGUGUCUGAUUUUCAUAUUAAUGGCACACAAACGAACCCAUUGUGGCGCCCUUAUCUUAAAUGUUCGGGGGCCAAGCCGAAGCGUCAAC
.(((.......((((((((((.(((((((.....))...((((((.............)))))).))))).))))))))))...(((((........)))))..)))... ( -27.82)
>consensus
CGACUAACUAAUUAAGAUAAGUGUGUCUGAUUUUCAUAUUAAUGGCAUACAAACGAACCCAUUGUGGCGCUCUUAUCUUAAAUGUUUGG_GGCCAAGCUGAAGCGUCAAA
.(((.......((((((((((.(((((((.....))...((((((.............)))))).))))).))))))))))..((((((...))))))......)))... (-27.27 = -27.44 +   0.17)

alignment

secondary structure

dotplot

Window 0

Location	18,625,645 – 18,625,754
Length	109
Sequences	6
Columns	110
Reading direction	reverse
Mean pairwise identity	97.26
Mean single sequence MFE	-24.88
Consensus MFE	-23.25
Energy contribution	-23.28
Covariance contribution	0.03
Combinations/Pair	1.03
Mean z-score	-1.08
Structure conservation index	0.93
SVM decision value	0.59
SVM RNA-class probability	0.792587
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18625645 109 - 27905053
UUUGACGCUUCAGCUUGGCC-CCAAACAUUUAAGAUAAGAGCGCCACAAUGGUUUCGUUUGUAUGCCAUUAAUAUGAAAAUCAGACACACUUAUCUUAAUUAGUUAGUCG
...((((((.......))).-...(((..((((((((((...(((.....)))...(((((.....(((....))).....)))))...))))))))))...))).))). ( -23.10)
>DroSec_CAF1 54867 109 - 1
UUUGACGCGUCAGCUUGGCC-CCAAACAUUUAAGAUAAGAGCGCCACAAUGGGUUCGUUUGUAUGCCAUUAAUAUGAAAAUCAGACACACUUAUCUUAAUUAGUUAGUCG
...(((((....))......-...(((..(((((((((((((.((.....))))))(((((.....(((....))).....)))))....)))))))))...))).))). ( -24.30)
>DroSim_CAF1 51659 109 - 1
UUUGACGCUUCAGCUUGGCC-CCAAACAUUUAAGAUAAGAGCGCCACAAUGGGUUCGUUUGUAUGCCAUUAAUAUGAAAAUCAGACACACUUAUCUUAAUUAGUUAGUCG
...((((((.......))).-...(((..(((((((((((((.((.....))))))(((((.....(((....))).....)))))....)))))))))...))).))). ( -24.30)
>DroEre_CAF1 52657 109 - 1
UUGGACGCUUCAGCUUGGCC-CCAAACAUUUAAGAUAAGAGCGCCACAAUGGGUUCGUUUGUAUGCCAUUAAUAUGAAAAUCAGACACACUUAUCUUAAUUAGUUAGUCG
...((((((.......))).-...(((..(((((((((((((.((.....))))))(((((.....(((....))).....)))))....)))))))))...))).))). ( -24.30)
>DroYak_CAF1 52873 109 - 1
UUUGACGCUUCAGCUUGGCC-CCAAACAUUUAAGAUAAGAGCGCCACAAUGGGUUCGUUUGUAUGCCAUUAAUAUGAAAAUCAGACACACUUAUCUUAAUUAGUUAGUCG
...((((((.......))).-...(((..(((((((((((((.((.....))))))(((((.....(((....))).....)))))....)))))))))...))).))). ( -24.30)
>DroAna_CAF1 50030 110 - 1
GUUGACGCUUCGGCUUGGCCCCCGAACAUUUAAGAUAAGGGCGCCACAAUGGGUUCGUUUGUGUGCCAUUAAUAUGAAAAUCAGACACACUUAUCUUAAUUAGUUAGUCG
...(((((....))..........(((..(((((((((((((((.((((.........))))))))).......((.....))......))))))))))...))).))). ( -29.00)
>consensus
UUUGACGCUUCAGCUUGGCC_CCAAACAUUUAAGAUAAGAGCGCCACAAUGGGUUCGUUUGUAUGCCAUUAAUAUGAAAAUCAGACACACUUAUCUUAAUUAGUUAGUCG
...(((((....))..........(((..(((((((((((((.((.....))))))(((((.....(((....))).....)))))....)))))))))...))).))). (-23.25 = -23.28 +   0.03)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:21 2006