Locus 7050

Sequence ID 3R_DroMel_CAF1
Location 18,624,754 – 18,624,853
Length 99
Max. P 0.745956
window11418

overview

Window 8

Location 18,624,754 – 18,624,853
Length 99
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 92.58
Mean single sequence MFE -26.68
Consensus MFE -23.80
Energy contribution -23.84
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.28
Structure conservation index 0.89
SVM decision value 0.46
SVM RNA-class probability 0.745956
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18624754 99 + 27905053
ACAUAAAGAAGGCAGCAAUAAUCAGCUCAACUUCAACGGCAGCUCCUUCAAAGGAGUCAUCGU------CAUC------GUGUUCAUUCAAUUGCGAAUUGCCGCACGGAA
.......((((..(((........)))...))))..(((((((((((....))))))..(((.------((..------.((......))..)))))..)))))....... ( -25.20)
>DroSec_CAF1 53971 102 + 1
ACAUAAAGAAGGCAGCAAUAAUCAGCUCAACUUCAACGGCAGCUCCUUCAAAGGAGCCAUCGU------CAUCG---UCGUGUUCAUUCAAUUGCGCAUUGCCGCACGGAA
.......((((..(((........)))...))))..(((((((((((....))))))......------.....---..((((..........))))..)))))....... ( -26.50)
>DroSim_CAF1 50776 102 + 1
ACAUAAAGAAGGCAGCAAUAAUCAGCUCAACUUCAACGGCAGCUCCUUCAAAGGAGUCAUCGU------CAUCG---UCGUGUUCAUUCAAUUGCGCAUUGCCGCACGGAA
.......((((..(((........)))...))))..(((((((((((....))))))......------.....---..((((..........))))..)))))....... ( -24.50)
>DroEre_CAF1 51706 111 + 1
ACAUAAAGAAGGCAGCAAUAAUCAGCUCAACUUCAGCGGCAGCUCCUUCAAAGGAGUCAUCGUCAGAGUCAUCGGCAUCGUGUUCAUUCAAUUGCGCAUUGCCGCCCGGAA
..........(((.(((((.....(((..((((..((((..((((((....))))))..))))..))))....)))...((((..........))))))))).)))..... ( -31.50)
>DroYak_CAF1 51971 105 + 1
GCAUAAAGAAGGCAGCAAUAAUCAGCUCAACUUCAACGGCAGCUCCUUCAAAGGAGUCAUCGC------CAUCGUCAUCGUGUUCAUUCAAUUGCGCAUUGCCGCACGGAA
((.....((((..(((........)))...))))...((((((((((....))))))......------..........((((..........))))..))))))...... ( -25.70)
>consensus
ACAUAAAGAAGGCAGCAAUAAUCAGCUCAACUUCAACGGCAGCUCCUUCAAAGGAGUCAUCGU______CAUCG___UCGUGUUCAUUCAAUUGCGCAUUGCCGCACGGAA
.......((((..(((........)))...))))..(((((((((((....))))))......................((((..........))))..)))))....... (-23.80 = -23.84 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:19 2006