| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,609,435 – 18,609,534 |
| Length | 99 |
| Max. P | 0.855931 |
| Location | 18,609,435 – 18,609,534 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 68.93 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -10.59 |
| Energy contribution | -10.90 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18609435 99 + 27905053 AUAAA---GAUAUUGUAUCU-UUUGCUGAUGUCAGGCAUCAAGUAUGC-AGAUAUAUCUCCUAU--------AAUCUCAUUAUGCCAAGCACCUGGUGGAUCUAGAUA----UUUU ...((---((((((((((((-..((((((((.....)))).))))...-))))))...(((.((--------(((...)))))((((......)))))))....))))----)))) ( -19.60) >DroSec_CAF1 38821 99 + 1 AUAAA---GAUAUUGUAUCA-UUUGCUGAUGUCAGGCAUUAAGUAUGC-AUAUAUAUCUCCUAU--------AUUCUCAUUAUGCCAAGCACCUGGUGGAUCUAGAUA----UUUU ...((---((((((.....(-((..(((.(((..(((((.....(((.-..(((((.....)))--------))...))).)))))..)))..)))..)))...))))----)))) ( -18.30) >DroEre_CAF1 35549 110 + 1 AUA-A---GAUAUUGUAUCG-UUUGCUGAUGUCAGGCAUCAAGUAUGC-AGAUAUAUCUCUUAUAAUCAUAUAAUCUCAUUAUGUCAAGCACCUGGUGCUUCUUGAUACUAUUUUU (((-(---((...(((((((-(.((((((((.....)))).)))).))-.))))))..))))))..................((((((((((...)))))...)))))........ ( -24.80) >DroYak_CAF1 36402 98 + 1 AUAAA---GAUAUUGUAUCU-UUUGCUGAUGUCAGGCAUCAAGUAUGC-AGAUAUAUCUUCUAUAGUCGCAUAAUCUCAUUAUGCCAAGCACCUGGUGGUUCU------------- ....(---((...(((((((-..((((((((.....)))).))))...-)))))))...)))......(((((((...)))))))..((.(((....))).))------------- ( -22.90) >DroAna_CAF1 32521 92 + 1 UUG-C---G--ACACUAUCU-GUUGCUGAUGUCAGUCAUCAAGUAUGCCAGAUAUAC----U------AAAUAAUCUUAUUAUGCCAAGCACCUGGCGGU---CGAUC----UUUU ...-(---(--((..(((((-(.((((((((.....)))).))))...))))))...----.------..............(((((......)))))))---))...----.... ( -23.20) >DroPer_CAF1 37344 88 + 1 AUG-CUCAA--AGACCACCUCUUUGGUGAUGUCAAUCAUCAACUAUGCCACAUAUUUCUUCUAU--------------AUUAUGUGGAACACCUGGCACU---C--------UGUC .((-(((((--(((.....)))))).(((((.....)))))......(((((((..........--------------..))))))).......))))..---.--------.... ( -19.00) >consensus AUA_A___GAUAUUGUAUCU_UUUGCUGAUGUCAGGCAUCAAGUAUGC_AGAUAUAUCUCCUAU________AAUCUCAUUAUGCCAAGCACCUGGUGGUUCUAGAUA____UUUU .............(((((((...((((((((.....)))).))))....)))))))..........................(((((......))))).................. (-10.59 = -10.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:15 2006