Locus 7046

Sequence ID 3R_DroMel_CAF1
Location 18,604,807 – 18,604,920
Length 113
Max. P 0.593072
window11412

overview

Window 2

Location 18,604,807 – 18,604,920
Length 113
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 74.25
Mean single sequence MFE -19.36
Consensus MFE -2.20
Energy contribution -2.40
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.11
SVM decision value 0.12
SVM RNA-class probability 0.593072
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18604807 113 + 27905053
CGAUUAUAAUUCCUUUAAGAUUUCUGGAAUUAAAGCAGUUUGCCUAGUUAUUACUAAACACUUAAACUUAAAAGGCAUUUAGUAGUGCUUACUAACUU----AUAAGCUGUGGUAAA
......(((((((............)))))))..((((((((..((((((((((((((..(((........)))...))))))))))...))))....----.))))))))...... ( -22.00)
>DroSec_CAF1 34202 110 + 1
UGAUUAUAAUUCCUUUAACAUUUAUAGAAUUAAAGCAGUCUGCCUAAUUAUAACUAAACACUUAGCCUUAA-AGGCAUUUAGUAGUGCUUACUAGCUU----AUAAGCU--GGUGAA
......((((((..(........)..))))))..(((.(((((((..(((...((((....))))...)))-))))....)).).)))(((((((((.----...))))--))))). ( -20.20)
>DroSim_CAF1 31231 95 + 1
--AUAAUAAUUCCUUUAACAUUUAUAGAAUUAAAGCAGUUUGCA-GUUUAUAACUAAACACUUAGUCUUAA-------------GUGCUUACUAACUU----AUAAGCU--GGUGAA
--....((((((..(........)..))))))..........((-((((((((.(((.((((((....)))-------------))).))).....))----)))))))--)..... ( -14.40)
>DroEre_CAF1 30955 112 + 1
CCAUUACACUUUCUUCAACAUUUCUAGAAUUAAACCAGUC----UAAUUAUUACUAAAUACUUAGCUUUAU-UGUCAUUUAGUAACGCUUACUUACUAACUUGUAAGCUGUGGUGAA
.(((((((................................----......(((((((((((..........-.)).))))))))).((((((..........))))))))))))).. ( -19.20)
>DroYak_CAF1 31611 108 + 1
CGAUUAUACUUUCUUCCACACUUCUAGAACUAAAUCAGUC----UAAUUAUUACUAAGCACUUAGCUUUAU-UAUCAUUUAGUGGGGCUCAGUAACUA----AUAAGCUGUGGUGAA
..........(((..((((((((.((((.((.....))))----)).............(((.((((((((-((.....)))))))))).))).....----..))).))))).))) ( -21.00)
>consensus
CGAUUAUAAUUCCUUUAACAUUUCUAGAAUUAAAGCAGUCUGC_UAAUUAUUACUAAACACUUAGCCUUAA_AGGCAUUUAGUAGUGCUUACUAACUU____AUAAGCUGUGGUGAA
......................................................................................(((((............)))))......... ( -2.20 =  -2.40 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:14 2006