Locus 7045

Sequence ID 3R_DroMel_CAF1
Location 18,602,311 – 18,602,406
Length 95
Max. P 0.542176
window11411

overview

Window 1

Location 18,602,311 – 18,602,406
Length 95
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 88.90
Mean single sequence MFE -32.04
Consensus MFE -24.68
Energy contribution -25.48
Covariance contribution 0.80
Combinations/Pair 1.09
Mean z-score -1.48
Structure conservation index 0.77
SVM decision value 0.02
SVM RNA-class probability 0.542176
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18602311 95 + 27905053
AUCAGAAAUCCCCACGUCAAAUCGUUCGGGAGGGUCGCGAGCCACCAAGGCAACUGACCACCGG----UCACAC--------AGGUGUUUUGCCACCAAUAAAUGCC
........((((.(((......)))..)))).(((.(((((.((((.((....))((((...))----))....--------.)))).))))).))).......... ( -30.00)
>DroSec_CAF1 31706 95 + 1
AUCAGAAAUCCCCGCGUCAAAUCGUUCGGGAGGGUCGCGAGCCACAGAGGGAACUAACCACCGG----UCACAC--------AGCUGGUUUGCCACCAAUAAUUGCC
........((((.(((......)))..)))).(((.((((((((.....(..(((.......))----)..)..--------...)))))))).))).......... ( -25.50)
>DroSim_CAF1 28744 95 + 1
AUCAGAAAUCCCCGCGUCAAAUCGUUCGGGAGGGUCGCGAGCCACAGAGGGAACUAACCACCGG----UCACAC--------AGCUGGUUUGCCACCAAUAAUUGCC
........((((.(((......)))..)))).(((.((((((((.....(..(((.......))----)..)..--------...)))))))).))).......... ( -25.50)
>DroEre_CAF1 28246 98 + 1
AUCAGAAAUCCCCGCGUCAAAUCGUU-GGGAGGGUCGCGAGCCACCGAGGGAACUAACCACCGG----UCACACA----AACAGGUGGUUUGCCGCCAAUAAUUGCC
........((((.(((......))).-)))).(((.(((((((((((..((......))..)(.----.....).----....)))))))))).))).......... ( -34.30)
>DroYak_CAF1 28888 106 + 1
AUCAGAAAUCCCCGCAUCAAAUCGUU-GGGAGGGUCGCGAGCCACCGAGGGAACUCACCACCGGUCGGUCACACAGGUGGACAGGUGGUUUGCCGCCAAUAAUUGCC
........((((.((........)).-)))).(((.(((((((((((((....))).(((((.((.(....))).)))))...)))))))))).))).......... ( -44.90)
>consensus
AUCAGAAAUCCCCGCGUCAAAUCGUUCGGGAGGGUCGCGAGCCACCGAGGGAACUAACCACCGG____UCACAC________AGGUGGUUUGCCACCAAUAAUUGCC
........((((.(((......)))..)))).(((.((((((((((..((.......))...(........)...........)))))))))).))).......... (-24.68 = -25.48 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:13 2006