Locus 7043

Sequence ID	3R_DroMel_CAF1
Location	18,593,760 – 18,593,851
Length	91
Max. P	0.645275

overview

Window 6

Location	18,593,760 – 18,593,851
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	82.39
Mean single sequence MFE	-19.06
Consensus MFE	-12.41
Energy contribution	-12.97
Covariance contribution	0.56
Combinations/Pair	1.15
Mean z-score	-1.82
Structure conservation index	0.65
SVM decision value	0.23
SVM RNA-class probability	0.645275
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18593760 91 - 27905053
AAGAUCGUUAAACGCGUUUAAUUAGGAAAUUUCUUUCCUAAAACAUUGCUUUAACAGAAGAUUUUCCAGGGCUUUUUC--CAAAGCUAGCGAU
...(((((((((.(((.....((((((((....)))))))).....)))))))))..............((((((...--.))))))...))) ( -19.90)
>DroSec_CAF1 23338 91 - 1
AAGAUCGUUGAACGCGUUUAUUUGGGAAAUUUCUUUCCGAAAACAUUACUUUAACAGAAGAUUUUCCAGGGCUUUUCC--AAAAGCCAGCGAU
...((((((............((((((((((((.....))))......((((....)))).))))))))((((((...--.)))))))))))) ( -20.10)
>DroSim_CAF1 19788 91 - 1
AAGAUCGGUAAACGUGUUGAUUUGGGAAAUUUCUUUCCGAAAACAUUAUUUUAACAGAAGAUUUUCCAGGGCUUUUCC--CAAAGCCAGCGAU
..............(((((.(((((((((..((((...(((((..((..........))..))))).))))..)))))--))))..))))).. ( -18.60)
>DroEre_CAF1 18726 92 - 1
UCGAUCUUAAUACUCAUUUGAUUGGGAAAUUUCUUUUUUAAAACAAUCCUUUAGCAAACGAUUUUCCAAGGCUUUUCCCCCAAAGCC-GCGAU
(((..................((((((((((..(((.(((((.......))))).))).))))))))))((((((......))))))-.))). ( -17.70)
>DroYak_CAF1 19045 91 - 1
ACGAUCUAAGAACUCAUUUAUUUGGGAAAUUUCUUUUUGAAAACAAUUCUUUAACACAAGAUUUUCCAGGGCUUUUCC-ACAAAGCC-CCGAU
.((...................((((((((((..(.(((((........))))).)..))))))))))(((((((...-..))))))-))).. ( -19.00)
>consensus
AAGAUCGUUAAACGCGUUUAUUUGGGAAAUUUCUUUCCGAAAACAUUACUUUAACAGAAGAUUUUCCAGGGCUUUUCC__CAAAGCCAGCGAU
............(((......(((((((((((..........................)))))))))))((((((......)))))).))).. (-12.41 = -12.97 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:08 2006