Locus 7042

Sequence ID 3R_DroMel_CAF1
Location 18,583,809 – 18,583,912
Length 103
Max. P 0.797076
window11405

overview

Window 5

Location 18,583,809 – 18,583,912
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 92.11
Mean single sequence MFE -29.13
Consensus MFE -24.60
Energy contribution -24.93
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.84
SVM decision value 0.60
SVM RNA-class probability 0.797076
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18583809 103 - 27905053
CAUUCCACAGAAUGCAUCGCCAUAUGUAUAUGGCGACCAAUUUGACUAAAUCGUUUGCUAAGCAUCGCAGUCAAGCAUCGCGAUGGCUCCAAAUGGAGCGGAA
..((((.((((.((..((((((((....)))))))).)).)))).....(((((.((((..((......))..))))..))))).(((((....))))))))) ( -35.80)
>DroSec_CAF1 13394 98 - 1
CGUUCCACAGAAUA-----UUAUAUGUAUAUGGCGACCAAUUUGACUAAAUCGUUUGCCAAGCAUCGCAGUCAAGCAUCGCGAUGGCUCCAAAUGGAGCGGAA
..((((........-----...........((((((.(.((((....)))).).))))))..((((((...........))))))(((((....))))))))) ( -27.60)
>DroSim_CAF1 9888 98 - 1
CAUUCCACAGAAUA-----UUAUAUGCAUAUGGCGACCAAUUUGACUAAAUCGUUUGCUAAGCAUCGCAGUCAAGCAUCACGAUGGCUCCAAAUGGAGCGGAA
..((((......((-----(..(((((...(((...)))..((((((....((..(((...))).)).)))))))))).)..)))(((((....))))))))) ( -24.00)
>consensus
CAUUCCACAGAAUA_____UUAUAUGUAUAUGGCGACCAAUUUGACUAAAUCGUUUGCUAAGCAUCGCAGUCAAGCAUCGCGAUGGCUCCAAAUGGAGCGGAA
..((((......................(((.((((....(((((((....((..(((...))).)).)))))))..)))).)))(((((....))))))))) (-24.60 = -24.93 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:08 2006