Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,502,831 – 2,502,922 |
Length | 91 |
Max. P | 0.845630 |
Location | 2,502,831 – 2,502,922 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 73.02 |
Mean single sequence MFE | -28.08 |
Consensus MFE | -14.51 |
Energy contribution | -14.73 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.25 |
Mean z-score | -1.81 |
Structure conservation index | 0.52 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2502831 91 + 27905053 ----------UUACUUUCUAGCUC----AACUUACCUUGAGGCUUUGGAACAUUCCUCUUGAGUUGCAUCCACUUGUAGGUGGGGAUGCUGCUGGAAUGAUUUGG ----------...(.(((((((..----((((((....((((...((...))..)))).))))))((((((.((.......)))))))).))))))).)...... ( -25.60) >DroPse_CAF1 28308 95 + 1 ----------CCAAUUCCUAUCACUAAAAACUCACCUUGUGGCUUGGGAACGUUCCGCUUGAGCUGCAUCCACUUGUAGGUGGGAAUGCUGCUCGAGUGAUUUGG ----------((((((((((((((..............))))..)))))).....(((((((((.(((((((((....)))))..)))).)))))))))..)))) ( -34.74) >DroGri_CAF1 61508 101 + 1 AAACAAUAUCUUAGCUUAGGGGCA----AGCUUACCUUGUGGCUUGGGAACAUUCCGCUUAAGUUGCAUCCAUUUGUAUGUUGGAAUGUUGGGCGCGUGAUUUGG ...(((.(((...((((((.((((----(.((((....((((..((....))..)))).)))))))).((((.........)))).).))))))....)))))). ( -25.90) >DroWil_CAF1 43593 82 + 1 ----------UUGUGU-------------UCUUACCUUGUGGCUUGGGAACAUUCCGUUUGAGUUGCAUCCAUUUGUAUGUUGGGAUAUUGGGUGUAUGAUUUGG ----------..((((-------------(((((((....))..))))))))).....(..(((((((((((...((((......)))))))))))..))))..) ( -18.70) >DroAna_CAF1 27975 89 + 1 ----------UUAUUUGUUAAA------CACUCACCUUGUGGCUUGGGAACGUUCCUCUUGAGCUGCAUCCACUUGUAGGUGGGCAGGUUGCUAGUGUGAUUUGG ----------............------..(((((((((..(((..(((.......)))..)))..)).........)))))))(((((..(....)..))))). ( -28.80) >DroPer_CAF1 28480 95 + 1 ----------CCAAUUCCUAUCACUAAAAACUCACCUUGUGGCUUGGGAACGUUCCGCUUGAGCUGCAUCCACUUGUAGGUGGGAAUGCUGCUCGAGUGAUUUGG ----------((((((((((((((..............))))..)))))).....(((((((((.(((((((((....)))))..)))).)))))))))..)))) ( -34.74) >consensus __________UUAAUUCCUAGC_C____AACUCACCUUGUGGCUUGGGAACAUUCCGCUUGAGCUGCAUCCACUUGUAGGUGGGAAUGCUGCUCGAGUGAUUUGG ..............................(((((((((..(((((((.........)))))))..)).........)))))))..................... (-14.51 = -14.73 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:50 2006