| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,571,408 – 18,571,506 |
| Length | 98 |
| Max. P | 0.635438 |
| Location | 18,571,408 – 18,571,506 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 80.99 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -14.71 |
| Energy contribution | -15.52 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18571408 98 + 27905053 GUAAACAAUCUUGUAAAAACACAAUA---AAA---AAUGGUUAAAAACGAGCCCAACUUCGUGGUGGAGCGCAUCAUGGACAAGCGCAUUACCAGCGAAGGCAA ((.......(((((...(((.((...---...---..)))))....))))).....(((((((((((.((((...........)))).)))))).))))))).. ( -23.10) >DroPse_CAF1 4932 96 + 1 GUAAACAACGC-----GAACCGAAUCUGUUAA---AAUGGUGAAAAACGAGCCCAAUUUCGUAGUGGAGCGCAUCGUGGACAAGCGAAUAACGAGCGAUGGCAA .....((.(((-----..........((((..---.((((((........(((((.........))).)).)))))).))))..((.....)).))).)).... ( -16.00) >DroSec_CAF1 2542 98 + 1 GUAAACAAUCUUGUUAAAACAUAAUA---AAA---AAUGGUUAAAAACGAGCCCAACUUCGUGGUGGAGCGCAUCAUGGACAAGCGCAUCACCAGCGAAGGCAA ((.......((((((....(((....---...---.)))......)))))).....((((((((((..((((...........))))..))))).))))))).. ( -25.90) >DroEre_CAF1 2528 97 + 1 GUAAACAAUCUAAUAAAAACGCAAUC---A-A---AAUGGUUAAAAACGAGCCCAACUUCGUGGUGGAACGCAUCAUGGACAAGCGCAUCACCAGCGACGGCAA ....................((....---.-.---...((((.......))))...(.(((((((((..(((...........)))..)))))).))).))).. ( -18.30) >DroWil_CAF1 2359 99 + 1 GUAAACAUUACAAUUU--UCACUAUA---AAACGCCAUGGUUAAAAACGAAUCCAAUUUCGUUGUUGAGCGCAUAGUAGACAAGCGCAUCACUGGCGAAGGCAA ................--........---...((((((((((((.((((((......)))))).))))((((...........)))).))).)))))....... ( -22.00) >DroYak_CAF1 2779 97 + 1 GUAAACAAUCGUAGAAAAACGCAUUA---A-A---AAUGGUUAAAAACGAGCCCAACUUCGUGGUGGAGCGCAUCAUGGACAAGCGCAUCACCAGCGACGGCAA ........((((.....(((.(((..---.-.---.))))))....))))(((.....((((((((..((((...........))))..))))).))).))).. ( -25.20) >consensus GUAAACAAUCUUAUAAAAACACAAUA___AAA___AAUGGUUAAAAACGAGCCCAACUUCGUGGUGGAGCGCAUCAUGGACAAGCGCAUCACCAGCGAAGGCAA ..................................................(((.....(((((((((.((((...........)))).)))))).))).))).. (-14.71 = -15.52 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:03 2006