Locus 7038

Sequence ID 3R_DroMel_CAF1
Location 18,570,216 – 18,570,327
Length 111
Max. P 0.649824
window11399

overview

Window 9

Location 18,570,216 – 18,570,327
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 84.02
Mean single sequence MFE -40.42
Consensus MFE -28.65
Energy contribution -29.65
Covariance contribution 1.00
Combinations/Pair 1.29
Mean z-score -2.31
Structure conservation index 0.71
SVM decision value 0.24
SVM RNA-class probability 0.649824
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18570216 111 - 27905053
GGUUUGUCAAAACUGGACAGACACUUUCUGCAAGCUGUGCAAAAUGCCCUUCUGCAAUGCCUCCUGUUUCGCCGAUGUGGCAGAGCAGCAUAAGCAAGCUUGCGGCAAGGG
.(((((((.......))))))).(((((((((((((.(((....(((......)))((((....((((..(((.....)))..))))))))..)))))))))))).)))). ( -41.70)
>DroSec_CAF1 1349 111 - 1
GGUUUGCCAAAACUGGACAGACACUUUCUGCAAGCUGUGCAAAAUGCCUAUCUGCGAUGCCUCCUGUUUCGCCGAUGUGGCAGAGCAGCAUAAGCAAGCUUGCGGCAAGGG
.((((((((....))).))))).(((((((((((((.(((....((((((((.((((.((.....)).)))).)))).))))..)))((....)).))))))))).)))). ( -45.20)
>DroSim_CAF1 1355 111 - 1
GGUUUGCCAAAACUGGACAGACACUUUCUGCAAGCUCUGCAAAAUGCCCAUCUGCGAUGCCUCCUGUUUCGCCGAUGUGGCAGAGCAGCAUAAGCAAGCUUGCGGCAAGGG
.((((((((....))).))))).(((((((((((((((((....((((((((.((((.((.....)).)))).)))).))))..))))........))))))))).)))). ( -46.80)
>DroEre_CAF1 1338 111 - 1
GGUCUGCCAAAACUGGACAGACACUUUCUGCAAGCUAUGCAAAAUGCCCUUUUGCGAUGCCUCCUGUUUCGCUGAUGUGGCAGAGCAGCACAAGCAAGCUUGCGGCAAGGG
.((((((((....))).))))).(((((((((((((.(((....(((((.((.((((.((.....)).)))).)).).))))..)))((....)).))))))))).)))). ( -44.10)
>DroYak_CAF1 1584 111 - 1
GGUGUGCCAAAACUGGACGGACACUUUCUGCAAGCUAUGCAAAAUGCCCUUCUGCGACGCCUCCUGUUUCGCUGAUGUGGCAGAGCAGCACAAGCAAUCUUGCGGCAAAGG
.((.(((((....))).)).)).(((((((((((...(((....(((((.((.((((.((.....)).)))).)).).))))..)))((....))...))))))).)))). ( -35.90)
>DroMoj_CAF1 1263 111 - 1
UUCAUGCAAAUGCUACACGGACAUUAGUUGCAAAUUCUGCCAGAUGCCUUUUUGCAAUACCAUCUGUUUUGAUGUCCUGGCCGAUGUGCACAAGGAAAGCUGUGGCAAGGG
..........((((((((.(((....)))(((...((.(((((.(((......)))....((((......))))..))))).))..))).........).))))))).... ( -28.80)
>consensus
GGUUUGCCAAAACUGGACAGACACUUUCUGCAAGCUAUGCAAAAUGCCCUUCUGCGAUGCCUCCUGUUUCGCCGAUGUGGCAGAGCAGCACAAGCAAGCUUGCGGCAAGGG
.((((((((....))).))))).(((((((((((((.(((....(((......))).......(((((..(((.....)))..))))).....)))))))))))).)))). (-28.65 = -29.65 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:02 2006