Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,560,163 – 18,560,266 |
Length | 103 |
Max. P | 0.845609 |
Location | 18,560,163 – 18,560,266 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 77.60 |
Mean single sequence MFE | -30.62 |
Consensus MFE | -22.97 |
Energy contribution | -21.42 |
Covariance contribution | -1.55 |
Combinations/Pair | 1.50 |
Mean z-score | -1.33 |
Structure conservation index | 0.75 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18560163 103 - 27905053 UUG--UAAUAUUCUUUCUUG-CUUUCAGUACUACUUAUUGUCCGAGGAGGAGUGCGAUGACGCCGAGGACGUUGAGGUGCCCAAGGCAUUGGGCGACGUUUUCGAG ...--....(((((((((((-....(((((.....)))))..)))))))))))(((....)))(((((((((((.((((((...))))))...))))))))))).. ( -36.80) >DroSec_CAF1 4367 102 - 1 UUA--AACUACUCU-ACUUG-CUUUCAGUACUACUUAUUGUCCGAGGAGGAGUGCGAUGAUGCCGAGGACGUUGAGGUGCCCAAGGCAUUGGGCGACGUUUUCGAG ...--...((((((-.((((-....(((((.....)))))..))))..)))))).........(((((((((((.((((((...))))))...))))))))))).. ( -32.50) >DroSim_CAF1 14525 102 - 1 UUG--UAAUAUUCU-ACUUG-CUUUCAGUACUACUUAUUGUCCGAGGAGGAAUGCGAUGAUGCCGAGGACGUUGAGGUGCCCAAGGCAUUGGGCGAUGUUUUCGAG (..--(..((((((-.((((-....(((((.....)))))..))))..))))))..)..)...(((((((((((.((((((...))))))...))))))))))).. ( -29.40) >DroWil_CAF1 7509 103 - 1 UU-UGCUUUAUUUC-CUUUU-UUUUUAGUAUUAUCUGCUCUCCGAGGAGGAAUGCGAUGAUGCCGAGGAUGUGGAAGUACCCAAAGCAUUGGGUGAUGUCUUUGAA ..-.....((((((-(....-((((..((((((((.((..(((.....)))..))))))))))..))))...)))))))..(((((((((....)))).))))).. ( -31.70) >DroMoj_CAF1 9402 102 - 1 UUA--CAUCAUCUU-UAUUAUUAU-UAGUAUUAUCUGCUGUCUGAGGAGGAGUGCGAUGAUGCCGAGGACGUCGAGGUACCUAAGGCAUUGGGCGAUGUAUUCGAA ...--(((((((..-...((....-))(((((.(((.((.....)).))))))))))))))).((((.((((((.....(((((....))))))))))).)))).. ( -26.70) >DroAna_CAF1 6210 91 - 1 -------------U-UUUUA-UUUCCAGUAUUAUUUGCUAUCCGAGGAGGAGUGUGACGAUGCCGAGGACGUUGAGGUGCCCAAGGCCUUGGGCGAUGUUUUCGAG -------------.-.....-......(((((..(..(..(((.....)))..)..).)))))((((((((((.....((((((....)))))))))))))))).. ( -26.60) >consensus UU___CAAUAUUCU_UCUUG_CUUUCAGUACUACUUACUGUCCGAGGAGGAGUGCGAUGAUGCCGAGGACGUUGAGGUGCCCAAGGCAUUGGGCGAUGUUUUCGAG ...........................(((((.(((.((.....)).))))))))........((((((((((.....((((((....)))))))))))))))).. (-22.97 = -21.42 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:00 2006