Locus 7035

Sequence ID 3R_DroMel_CAF1
Location 18,550,587 – 18,550,681
Length 94
Max. P 0.904863
window11396

overview

Window 6

Location 18,550,587 – 18,550,681
Length 94
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 92.01
Mean single sequence MFE -22.50
Consensus MFE -19.10
Energy contribution -20.77
Covariance contribution 1.67
Combinations/Pair 1.06
Mean z-score -2.77
Structure conservation index 0.85
SVM decision value 1.04
SVM RNA-class probability 0.904863
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18550587 94 + 27905053
---UAAACUUAAAUAUUAAUUAUGUUUUCUGCGGUUUAUUGCAAUAGUUACAUGGUAGGCUUAUUGUAAUGUCACGUAGUAUAAUUGGUAUUUGUAA
---......(((((((((((((((....(((((...(((((((((((((........))).))))))))))...))))))))))))))))))))... ( -25.80)
>DroSec_CAF1 3421 94 + 1
---UAAACUUAAAUAUUAAUUAUGUUUUCUGCGGUUUAUUGCAAUAGUUACAUGGUAGGCUUAUUGUAAUGUCACGUAUUAUAUUCGGUAUUUGUAA
---......(((((((..(.((((.....((((...(((((((((((((........))).))))))))))...)))).)))).)..)))))))... ( -18.00)
>DroEre_CAF1 3460 97 + 1
AAGUACACUUACUUAUUAAUUAUGUUUUCUGCGGUUCAUUGCAAGAGUUACAUGGUAGGCUUAUUGUAAUGUCACGUAAUAUAAUUGGUAUUUGUAA
.........(((.((((((((((((....((((...(((((((((((((........))))).))))))))...))))))))))))))))...))). ( -23.70)
>consensus
___UAAACUUAAAUAUUAAUUAUGUUUUCUGCGGUUUAUUGCAAUAGUUACAUGGUAGGCUUAUUGUAAUGUCACGUAAUAUAAUUGGUAUUUGUAA
.........((((((((((((((((....((((...(((((((((((((........))).))))))))))...))))))))))))))))))))... (-19.10 = -20.77 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:59 2006