Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,549,466 – 18,549,558 |
Length | 92 |
Max. P | 0.598527 |
Location | 18,549,466 – 18,549,558 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 83.91 |
Mean single sequence MFE | -36.98 |
Consensus MFE | -27.97 |
Energy contribution | -26.50 |
Covariance contribution | -1.47 |
Combinations/Pair | 1.30 |
Mean z-score | -1.79 |
Structure conservation index | 0.76 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18549466 92 - 27905053 AUGGGGAGCUCGCGCUUUUGACAAUAUGCUAAUUGUGCCACCCGGCUCUGGCAUUGUGCACCAGGUUAACCUGGAGUAUCUGGCCCGAGUGG .((((((((....))))...(((((......)))))....))))((((.(((...((((.(((((....))))).))))...))).)))).. ( -34.30) >DroPse_CAF1 2314 92 - 1 GUGGGGCGCCCGGGCGUUCAACAACAUGCUGAUUGUGCCCCCGGGCUCCGGCAUUGUGCAUCAGGUAAACUUGGAGUACUUGGCCCGCGUUG (((.((.(((((((.((.(((((......)).))).)).))))))).))(((...((((..((((....))))..))))...)))))).... ( -41.00) >DroSec_CAF1 2310 92 - 1 AUGGGGAGCCCGCGCUUUUGACAAUAUGCUAAUUGUGCCACCCGGCUCUGGCAUUGUGCACCAGGUUAACCUGGAGUACCUGGCCCGAGUGG .((((((((....))))...(((((......)))))....))))((((.(((...((((.(((((....))))).))))...))).)))).. ( -35.30) >DroAna_CAF1 2679 92 - 1 GUGGGGGGCCAAAGCCUUCGACAAUAUGCUGAUUGUGCCGCCUGGGUCCGGCAUAGUGCAUCAGGUUAACCUGGAAUACUUGGCGCGUGUAG ((.((((((....)))))).)).(((((((((((((((((........))))))))).))(((((....)))))..........)))))).. ( -34.60) >DroPer_CAF1 2314 92 - 1 GUGGGGCGCCCGGGCGUUCAACAACAUGCUGAUUGUGCCCCCGGGCUCCGGCAUUGUGCAUCAGGUGAACUUGGAGUACUUGGCCCGCGUUG (((.((.(((((((.((.(((((......)).))).)).))))))).))(((...((((..((((....))))..))))...)))))).... ( -42.50) >DroEre_CAF1 2317 92 - 1 AUGGGGAGCACGCGCUUUUGACAAUAUGCUAAUUGUGCCACCCGGUUCUGGUAUUGUGCACCAGGUUAACCUGGAGUACCUUGCCCGAGUGG .((((..(((((.((............))....)))))..)))).(((.((((..((((.(((((....))))).))))..)))).)))... ( -34.20) >consensus AUGGGGAGCCCGCGCUUUCGACAAUAUGCUAAUUGUGCCACCCGGCUCCGGCAUUGUGCACCAGGUUAACCUGGAGUACCUGGCCCGAGUGG .((((((((....))))........((((((...(.(((....))).))))))).((((.(((((....))))).))))....))))..... (-27.97 = -26.50 + -1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:58 2006