Locus 7030

Sequence ID 3R_DroMel_CAF1
Location 18,537,860 – 18,537,962
Length 102
Max. P 0.516063
window11388

overview

Window 8

Location 18,537,860 – 18,537,962
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.36
Mean single sequence MFE -31.33
Consensus MFE -21.55
Energy contribution -20.47
Covariance contribution -1.08
Combinations/Pair 1.33
Mean z-score -1.19
Structure conservation index 0.69
SVM decision value -0.03
SVM RNA-class probability 0.516063
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18537860 102 - 27905053
CAUAUUCGGUGCUGCAUUGCAGGUCGGGGACAGUGCAGUAUUUCUAUCGACGGGCAGACCAGAUCGACCCUAUAUCGGACGCAUUGAGUCCAUGUGGGAAAC
.......(((((((((((((........).))))))))))))....(((((((.....)).).)))).(((((((.((((.......))))))))))).... ( -32.90)
>DroVir_CAF1 4457 92 - 1
---AUUU-------UAUUGUAGGUCGGGGACUGUGCAGUAUUUCUAUCCACAGGUAGACCGGAUCGCCCUUACAUCGGGCGCAUCGAGUCUAUGUGGGAGAC
---....-------(((((((((((...)))).)))))))......(((.((.((((((..((((((((.......))))).)))..)))))).)))))... ( -33.80)
>DroGri_CAF1 4693 92 - 1
---GUAC-------AAUCGUAGGUCGGGGACUGUGCAGUAUUUUUAUCCACGGGUAGACCGGAUCGCCCCUAUAUUGGGCGUAUCGAGUCCAUGUGGGAGAC
---((((-------(.((.(......).)).)))))..........((((((....((((((..(((((.......)))))..))).)))..)))))).... ( -28.10)
>DroWil_CAF1 4849 93 - 1
CCUUUUC---------UUGCAGGUCGGGGAUAGUGCAGUAUUUUUAUCCACGGGCAGGCCAGAUCGUCCAUAUAUUGGGCGCAUCGAGUCCAUGUGGGAGAC
...((((---------(..((.(((.(((((((..........)))))).).))).(((..(((((((((.....)))))).)))..)))..))..))))). ( -32.70)
>DroMoj_CAF1 4518 95 - 1
---AUUC-A---UGAAUUUCAGGUCGGGGACUGUGCAGUAUUUCUAUCUACGGGUAGACCGGAUCGCCCCUACAUUGGACGCAUCGAGUCCAUGUGGGAGAC
---....-.---.........((((.((.(((....)))...((((((....)))))))).))))...(((((((.((((.......))))))))))).... ( -32.90)
>DroPer_CAF1 4521 89 - 1
UUCAU-------------UUAGGUCGGGGACAGUGCAGUAUUUCUAUCGACGGGCAGACCGGAUCGUCCCUAUAUCGGACGCAUUGAGUCCAUGUGGGAGAC
.....-------------...(((((....)..(((.((..........))..))))))).....((((((((((.((((.......))))))))))).))) ( -27.60)
>consensus
___AUUC________AUUGCAGGUCGGGGACAGUGCAGUAUUUCUAUCCACGGGCAGACCGGAUCGCCCCUAUAUCGGACGCAUCGAGUCCAUGUGGGAGAC
.....................(((((....)..(((.((..........))..)))))))........(((((((.((((.......))))))))))).... (-21.55 = -20.47 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:51 2006