Locus 7029

Sequence ID 3R_DroMel_CAF1
Location 18,536,179 – 18,536,299
Length 120
Max. P 0.572716
window11387

overview

Window 7

Location 18,536,179 – 18,536,299
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -49.97
Consensus MFE -32.20
Energy contribution -33.73
Covariance contribution 1.54
Combinations/Pair 1.36
Mean z-score -1.55
Structure conservation index 0.64
SVM decision value 0.08
SVM RNA-class probability 0.572716
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18536179 120 - 27905053
AGUGUUCGUGGUCGAUGGACUGAGGGCGCAAUCCGUUUUGGCUGACCACUGCAGUGCAGUUCCUGACCUCCGGGAGCUGUUCGUUGAACAGGCAUUGGUUGGCAUCUCGCGGGCUUGCCC
...((((..((((....))))..))))(((((((((....((..((((.(((.(.((((((((((.....)))))))))).)(.....)..))).))))..)).....))))).)))).. ( -49.30)
>DroSec_CAF1 5984 120 - 1
GGUGUUCGUGGUCGAUGGAUUGCGGGCGCAAUCCGUUUUGGCGGACCACUGCAGUGCAGUUCCUGACCUCCGGGAGCUGUUCGUUGACCAGGCAUUAGUUGGCAUCUCGCGGGCUUGCCC
........(((((((((((((((((......(((((....)))))...)))))))((((((((((.....))))))))))))))))))))((((..((((.((.....)).)))))))). ( -53.20)
>DroSim_CAF1 5736 120 - 1
GGUGUUCGUGGUCGAUGGACUGCGGGCGCAAUCCGUUUUGGCGGACCACUGCAGUGCGGUUCCUGACCUCCGGGAACUGUUCGUUGACCACGCAUUAGUUGGCAUCUCGCGGGCUUGCCC
(((...(((((((((((((((((((......(((((....)))))...)))))))((((((((((.....))))))))))))))))))))))....((((.((.....)).)))).))). ( -55.60)
>DroEre_CAF1 5988 120 - 1
GGUGUUUGUGGUCGAUGGACUGAGGGCGCAAUCUGUGUUCGCGGACAACUGCAGUUCGGUUCCUGACCUCCGGGAGCUGUUCAUUGGCCAGGCACUAGUUGGCAUCUCGCGGGCGUGUCC
((((((..((((((((((((.((((((((.....))))))((((....))))...))((((((((.....)))))))))))))))))))))))))).(((.((.....)).)))...... ( -49.60)
>DroYak_CAF1 5999 120 - 1
GGUGUUUGUGGUCGAUGGACUGAGGGCGCAAUCUGUUUUGGCGGACAACUGCAGUUCGGUUCCUGACCUCCGGGAGCUGUUCAUUGACCAGGCACUAGUUGGCAUCUCGCGGGCAUGCCC
((((((..((((((((((((...(((((((.(((((....)))))....))).))))((((((((.....))))))))))))))))))))))))))....(((((((....)).))))). ( -50.80)
>DroAna_CAF1 6245 120 - 1
GGUCUUCGUUUCCGAUGGCCUGCGUGCAGGGUCCAUUUUGGAGAACAACUGCAGCAAUGUGCCCGACUUGCGGAGCUUUUUCGAAGAUCGCGGUCUUGUGGGCAUUUCCAAAGCCUCAUC
((((((((........((((((((.(..(((..(((((((.((.....)).))).))))..)))..).))))).)))....))))))))(.((.(((.((((....))))))))).)... ( -41.30)
>consensus
GGUGUUCGUGGUCGAUGGACUGAGGGCGCAAUCCGUUUUGGCGGACAACUGCAGUGCGGUUCCUGACCUCCGGGAGCUGUUCGUUGACCAGGCACUAGUUGGCAUCUCGCGGGCUUGCCC
((((((..((((((((((((.(((.(((...(((((....)))))....)))..)))((((((((.....)))))))))))))))))))))))))).(((.((.....)).)))...... (-32.20 = -33.73 +   1.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:50 2006