| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,535,178 – 18,535,298 |
| Length | 120 |
| Max. P | 0.648534 |
| Location | 18,535,178 – 18,535,298 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.61 |
| Mean single sequence MFE | -32.63 |
| Consensus MFE | -14.97 |
| Energy contribution | -15.28 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18535178 120 + 27905053 GCUCACCUUUAGUGCCUCCUCGUACUGUUCCUUGGCCACCAGAUACUUAAUUAUCUGCGGAUAGUUUUCUAUCUCUGCCGAGCCCAGACUUUCAAAUUUGGGCAGCAACAGAUAAAGUAU (((......((((((......))))))....(((((...((((((......)))))).((((((....))))))..)))))(((((((........)))))))))).............. ( -32.40) >DroSec_CAF1 4975 120 + 1 ACUCACCUUUAGUGCCUCCUCGUACUGUUCCUUGGCCACAAGAUACUUAAUUAUCUGCGGAUAGUUUUCUAUCUCUGCCGAGCCCAGACUUUUAAAUUUGGGCAGCAACAGAUAAAGUAU .........((((((......))))))...((((....))))((((((...((((((.((((((....)))))).(((...(((((((........))))))).))).)))))))))))) ( -33.00) >DroSim_CAF1 4727 120 + 1 ACUCACCUUUAGUGCCUCCUCGUACUGUUCCUUGGCCACCAGAUACUUAAUUAUCUGCGGAUAGUUUUCUAUCUCUGCCGAGCCCAGACUUUCAAAUUUGGGCAGCAACAGAUAAAGUAU ......(((((((((......))))((((.((((((...((((((......)))))).((((((....))))))..)))))(((((((........))))))).).))))..)))))... ( -31.70) >DroEre_CAF1 4960 120 + 1 ACUCACCCUAACGGCCUGGUCGUGGUUUUCCUGGGACACCAGAUACUUCAUUCUCAGCGGAUAGUUUUCUAUCUCUGCCGUCCCCAGACUCUCAAAUUUGGGUAGCCACAGAUAGAGAAU .(((..((....))....(((((((((...(((((((...(((........)))(((.((((((....)))))))))..)).)))))((((........)))))))))).))).)))... ( -34.50) >DroYak_CAF1 4971 120 + 1 ACUCACCUUAAAGGCCUGGUCGUAGUGCUCCUGGGCCACCAGAUACUUCAUUCUCUGCGGAUAGUUUUCUAUCUCUGCCGUGCCCAGACUUUCGAAUUUGGGCAGGCACUGAUACAUAAU ............((((..(..(.....)..)..))))..(((................((((((....)))))).((((.((((((((........)))))))))))))))......... ( -37.70) >DroAna_CAF1 5228 120 + 1 ACUCAAGGUUGUGGCCUUUAAGAUGUUUUCUUCGGCCAGGAGUAAUUUAACCACCUUUAUGUAGGCAUCUAUCUUUUCGGAGGUCAGAUCAUCGAAUUUGGGAAGAUAAUCACAGAAAAU ......((((.(((((...((((.....)))).)))))(((....))))))).(((......)))....((((((..((((..((........)).))))..))))))............ ( -26.50) >consensus ACUCACCUUUAGGGCCUCCUCGUACUGUUCCUUGGCCACCAGAUACUUAAUUAUCUGCGGAUAGUUUUCUAUCUCUGCCGAGCCCAGACUUUCAAAUUUGGGCAGCAACAGAUAAAGAAU .........((((((......))))))...((((....))))..............((((((((....)))))).......(((((((........))))))).)).............. (-14.97 = -15.28 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:49 2006