| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,529,619 – 18,529,711 |
| Length | 92 |
| Max. P | 0.527388 |
| Location | 18,529,619 – 18,529,711 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.73 |
| Mean single sequence MFE | -23.84 |
| Consensus MFE | -15.71 |
| Energy contribution | -14.33 |
| Covariance contribution | -1.39 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18529619 92 + 27905053 --UA----U-------AU-CUG---CAGGUAUUCGACGAUAUCGCCGUGGAGCUGGCCAUGGCCAUUCUUCAGUUCUUCCAGAGCAGUCCCAACGAAGACCAAAUCUUC --..----.-------..-...---..(((.((((..((.((.(((((((......))))))).))...)).((((.....))))........)))).)))........ ( -24.40) >DroVir_CAF1 13923 97 + 1 AAUG----U-------UU-AUUGAAUAGGUAUUCGAUGAUGUCGCUGUGGAGCUGGCAAUGGCCAUACUGCAGUUCUUCCAAAGCAGUCCCAACGAAGAUCAAAUCUUU ....----.-------..-(((((((....)))))))(((.(((.((.(((..((((....))))..((((............))))))))).)))..)))........ ( -21.60) >DroGri_CAF1 14122 99 + 1 UUUA----UAUC--CAAU-CUU---UAGGUAUUUGAUGACAUUGCCGUAGAGCUGGCAAUGGCCAUACUACAGUUCUUCCAAAGCAGUCCCAACGAAGAUCAAAUCUUU ....----....--....-...---.(((.((((((((.((((((((......))))))))..)).........(((((...............)))))))))))))). ( -17.46) >DroWil_CAF1 7161 99 + 1 AACAUUUCU-------CUCUUG---CAGGUCUUUGAUGACAUUGCCGUGGAACUAGCCAUGGCUAUUCUACAGUUCUUCCAGAGCAGCCCAAAUGAAGAUCAAAUCUUU ..(((((((-------((((.(---((((((......))).)))).((((((.((((....)))))))))).........)))).))...)))))(((((...))))). ( -24.20) >DroMoj_CAF1 6959 104 + 1 UUUU----UGGCCUCAUU-CUUCGACAGGUAUUCGAUGACGUUGCCGUGGAGCUGGCCAUGGCCAUACUGCAGUUCUUCCAAAGCAGUCCCAACGAAGACCAAAUCUUU ..((----(((......(-(((((...((((..((....)).)))).(((...((((....)))).(((((............))))).))).)))))))))))..... ( -27.80) >DroAna_CAF1 12102 94 + 1 GACA----A-------UC-UUU---UAGGUUUUCGAUGACAUCGCUGUAGAACUGGCCAUGGCCAUUCUUCAGUUCUUCCAGAGCAGUCCUAACGAAGACCAGAUCUUC ....----.-------..-...---..((((((((..(((.....((.((((.((((....)))))))).))((((.....)))).)))....))))))))........ ( -27.60) >consensus AAUA____U_______UU_CUU___CAGGUAUUCGAUGACAUCGCCGUGGAGCUGGCCAUGGCCAUACUACAGUUCUUCCAAAGCAGUCCCAACGAAGACCAAAUCUUU ...........................(((.((((..(((...((...(((((((((....))).......))))))......)).)))....)))).)))........ (-15.71 = -14.33 + -1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:46 2006