Locus 7024

Sequence ID 3R_DroMel_CAF1
Location 18,527,345 – 18,527,505
Length 160
Max. P 0.978106
window11380 window11381

overview

Window 0

Location 18,527,345 – 18,527,465
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.42
Mean single sequence MFE -38.58
Consensus MFE -38.10
Energy contribution -38.10
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.99
SVM decision value 1.81
SVM RNA-class probability 0.978106
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18527345 120 - 27905053
UCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAAGUGGCAACCAAAAUACAUUCCAGGCCCAGCUGGUGGUCCU
.(((((.(((((.(((.....))).))))).))))).((((((((((((...((...(......).......(((((...)))))..............))...))))))))..)))).. ( -38.10)
>DroSec_CAF1 7113 120 - 1
UCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAAGUGGCAACCAAAAUACAUUCCAGGCCCAGCUGGAGGUCCU
.(((((.(((((.(((.....))).))))).))))).((((((((((((...((...(......).......(((((...)))))..............))...))))))))..)))).. ( -38.10)
>DroSim_CAF1 8640 120 - 1
UCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAAGUGGCAACCAAAAUACAUUCCAGGCCCAGCUGGAGGUCCU
.(((((.(((((.(((.....))).))))).))))).((((((((((((...((...(......).......(((((...)))))..............))...))))))))..)))).. ( -38.10)
>DroEre_CAF1 11433 120 - 1
UCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAAGUGGCAACCAAAAUACAUUCCAGGCCCAGCUGGGGGUCCU
.....(.(((((.(((.....))).))))).)(((((..((((((((((...((...(......).......(((((...)))))..............))...)))))))))).))))) ( -40.50)
>DroYak_CAF1 8712 120 - 1
UCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAAGUGGCAACCAAAAUACAUUCCAGGCCCAGCUGGAGGUCCU
.(((((.(((((.(((.....))).))))).))))).((((((((((((...((...(......).......(((((...)))))..............))...))))))))..)))).. ( -38.10)
>consensus
UCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAAGUGGCAACCAAAAUACAUUCCAGGCCCAGCUGGAGGUCCU
.(((((.(((((.(((.....))).))))).))))).((((((((((((...((...(......).......(((((...)))))..............))...))))))))..)))).. (-38.10 = -38.10 +   0.00)

alignment

Postscript

secondary structure

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dotplot

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Window 1

Location 18,527,385 – 18,527,505
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.00
Mean single sequence MFE -37.86
Consensus MFE -35.34
Energy contribution -35.74
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.93
SVM decision value 1.07
SVM RNA-class probability 0.910554
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18527385 120 - 27905053
UUGCAGUGGUUUUUAUUACACUCGGCAAGGGCAAGGACCAUCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAA
....((((((((((.......(((....((.......))..(((((.(((((.(((.....))).))))).))))))))(((((((......))))))).........)))))))))).. ( -36.30)
>DroSec_CAF1 7153 120 - 1
UUGCAGUGGUUUUUAUUACACUCGGCAAGGGCAAGGACCAUCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAA
....((((((((((.......(((....((.......))..(((((.(((((.(((.....))).))))).))))))))(((((((......))))))).........)))))))))).. ( -36.30)
>DroSim_CAF1 8680 120 - 1
UUGCAGUGGUUUUUAUUACGCUCGGCAAGGGCAAGGACCAUCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAA
....((((((((((.....((((.....))))((((.....))))....((((..((((((....)).))))..)))).(((((((......))))))).........)))))))))).. ( -38.30)
>DroEre_CAF1 11473 120 - 1
UUGCAGUGGUUUUUAUUACGCUCUGCAAGGGCAAGGACCAUCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAA
....((((((((((....(((((((((..(((((((.....)))).....)))..)))..(((......))))))))).(((((((......))))))).........)))))))))).. ( -39.20)
>DroYak_CAF1 8752 120 - 1
UUGCAGUGGUUUUUAUUACGCUCUGCAAGGGCAAGGACCAUCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAA
....((((((((((....(((((((((..(((((((.....)))).....)))..)))..(((......))))))))).(((((((......))))))).........)))))))))).. ( -39.20)
>consensus
UUGCAGUGGUUUUUAUUACGCUCGGCAAGGGCAAGGACCAUCCUUCACACGUCAAUGCAAUGUUAAUGUGCGGGGGCGACCCGGCUGGGAAAGGUCGGGAAAAACACAAAAAGCCAUUAA
....((((((((((.....((((.....))))((((.....))))....((((..((((((....)).))))..)))).(((((((......))))))).........)))))))))).. (-35.34 = -35.74 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:44 2006