Locus 7023

Sequence ID 3R_DroMel_CAF1
Location 18,513,731 – 18,513,851
Length 120
Max. P 0.791855
window11379

overview

Window 9

Location 18,513,731 – 18,513,851
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.06
Mean single sequence MFE -37.12
Consensus MFE -19.97
Energy contribution -20.55
Covariance contribution 0.58
Combinations/Pair 1.27
Mean z-score -1.92
Structure conservation index 0.54
SVM decision value 0.59
SVM RNA-class probability 0.791855
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18513731 120 + 27905053
CAUCCAAUUUGGGAUCGCAUUUGAAGUGCUGCGAUAUAUUCUCGCCAUGCAAGCAGCGCAGCAUCCUGCCCAGCCAAACGGGCAAAUAGUUCGCAAUGGUAUCCUCCAAAAAAUUGGACA
..((((((((((((((.(((((((((((((((((.....))..((...))..))))))).......(((((........))))).....)))).))))).))))).....)))))))).. ( -37.70)
>DroVir_CAF1 549 120 + 1
CCUCAUGCUGGGGAUCACAUUGGAAAUGCUGUGCAAUAUUCUCGCCAUGUACACAGCGUAGCAACUUGCCCAACCAGGUGGGCAGAUAGUUAGAAACAACAUCCUCCAGCAUAUUGGACA
((..(((((((((((....((((..((((((((..((((.......)))).))))))))..)((((((((((......))))))...)))).....))).)))).)))))))...))... ( -39.10)
>DroGri_CAF1 649 120 + 1
UCUCCUGCUGCGGAUCACAUUUGAAGCGCUGGGCAAUGUUCUCUCCGUGCACACAGCGCAACAGUUUGCCCAGCCAUGUGGGCAGAUAGUUGGCGACGAUAUCCUCCAGCAUAUUCGAGA
((((..(((.(((((...))))).)))((((((..(((((.((.((((((.....))))(((.(((((((((......))))))))).))))).)).)))))..))))))......)))) ( -45.40)
>DroEre_CAF1 826 120 + 1
CAUCCAGUUCGGGAUCGCAUUUAAAGUGCUGCGAUAUAUUCUCGCCAUGCAAGCAGCGCAGCAUCCUGCCCAGCCAUACGGGCAGAUAGUUGGUAAUGAAAUCCUCCAAAAAAUUAGACA
..........(((((..((((....(((((((((.....))..((...))..)))))))((((((.(((((........)))))))).)))...))))..)))))............... ( -32.70)
>DroYak_CAF1 446 120 + 1
CAUCCAAAUUGGGAUCGCAUUUGAAGUGCUGCGAUAUAUUCUCGCCAUGCAAGCAGCGCAGCAUCCUGCCCAGCCAGACGGGCAGAUAGUUGGCAAUGAAAUCCUCUAAAAAGUUGGACA
..(((((...(((((..((((((...(((.((((.......))))...)))..))((.(((((((.(((((........)))))))).))))))))))..)))))........))))).. ( -37.60)
>DroAna_CAF1 492 120 + 1
CAUCCGACUUAGGAUCACACUGGAAGUGCUGCGAGAUGUUCUCUCCGUAAACACACCGCAUCAUCCUAGCCAGCCAUACAGGAAGAUAGUUGGCAAUCACAUCCUCCAGCGUGUUGGUUA
.((((......))))(((.(((((.(((.(((((((.....))).))))..)))..............((((((.((........)).))))))..........))))).)))....... ( -30.20)
>consensus
CAUCCAACUUGGGAUCACAUUUGAAGUGCUGCGAUAUAUUCUCGCCAUGCAAACAGCGCAGCAUCCUGCCCAGCCAUACGGGCAGAUAGUUGGCAAUGAAAUCCUCCAAAAAAUUGGACA
...........((((..........(((((((....................)))))))......((((((........))))))...............))))(((((....))))).. (-19.97 = -20.55 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:42 2006