Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,493,561 – 18,493,652 |
Length | 91 |
Max. P | 0.780042 |
Location | 18,493,561 – 18,493,652 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 91.43 |
Mean single sequence MFE | -28.37 |
Consensus MFE | -24.00 |
Energy contribution | -23.44 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.46 |
Structure conservation index | 0.85 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.780042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18493561 91 - 27905053 GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGAGCGAGCGAGCGAGAAGCUUACACAGAGAGAAAAUCAUUCGGCGUCUG ((......(((((((((((..(((....)))..)))))((((((((...(......)..))))))))))))))...........))..... ( -26.83) >DroSec_CAF1 15089 91 - 1 GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGCGCGAGCGAGAGAGGAGCUCACACAGAGAGAAACCCAAUCGGUUUCUG ........((((..(((((..(((....)))..)))))(((((.((...(....)....)).)))))))))(((((((.....))))))). ( -30.70) >DroSim_CAF1 14009 91 - 1 GCAAAAAGCUUUUUGCAGUUGCAGUUCCUUGUGGCUGUGUGUGCGCGAGCGAGAGAGGAGCUUACACAGAGAGAAAACCAUUCGGUUUCUG .....((((((((((((((..(((....)))..)))))...(((....)))...)))))))))........(((((.((....))))))). ( -28.40) >DroEre_CAF1 15163 91 - 1 GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGUGCGAGCGACAGAGGAGCUCACACGGAGAGAAAACCUGUCGGUUUUAG ........(((((((((((..(((....)))..))))))..((((.((((..(...)..)))).)))))))))((((((....)))))).. ( -28.60) >DroYak_CAF1 16426 91 - 1 GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGUGCGAGCGAGAGAGGAGCUUACACAGAGAGAAAACCUUUCGGGUUUAG ........(((((((((((..(((....)))..)))))(((((.((...(....)....)).))))))))))).(((((.....))))).. ( -27.30) >consensus GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGCGCGAGCGAGAGAGGAGCUUACACAGAGAGAAAACCAUUCGGUUUCUG ........(((((((((((..(((....)))..)))))(((((.((...(....)....)).))))))))))).................. (-24.00 = -23.44 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:38 2006