Locus 702

Sequence ID 3R_DroMel_CAF1
Location 2,499,165 – 2,499,264
Length 99
Max. P 0.962520
window1115

overview

Window 5

Location 2,499,165 – 2,499,264
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 93.67
Mean single sequence MFE -31.77
Consensus MFE -26.98
Energy contribution -26.70
Covariance contribution -0.28
Combinations/Pair 1.07
Mean z-score -2.48
Structure conservation index 0.85
SVM decision value 1.54
SVM RNA-class probability 0.962520
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2499165 99 - 27905053
UUAUUAGCCUUUUGAUGGGCGCUAUCGUAAUUGAAAAGUUCCCAUCGAGGCGGGUUAGCCUUGUUGUGGUUGAACAGUUUAAUUAAUGCAUGGCAACUG
......((((......))))(((((((((((((((..((((((((((((((......))))))..))))..))))..))))))).))).)))))..... ( -34.40)
>DroSec_CAF1 28960 99 - 1
UUAUUAGCCUUUUGAUGGGCCCUAUCGUAAUUGAAAAGUUCCCAUCGAGGCGGGUUAGCCUUGUUGUGGUUGAACAGUUUAAUUAAUGCAUGGCAACUG
......(((((..((((((..((.(((....)))..))..))))))))))).((((.(((.(((..(((((((.....)))))))..))).))))))). ( -31.00)
>DroSim_CAF1 26601 99 - 1
UUAUUAGCCUUUUGAUGGGCCCUAUCGUAAUUGAAAAGUUCCCAUCGAGGCGGGUUAGCCUUGUUGUGGUUGAACAGUUUAAUUAAUGCAUGGCAACUG
......(((((..((((((..((.(((....)))..))..))))))))))).((((.(((.(((..(((((((.....)))))))..))).))))))). ( -31.00)
>DroEre_CAF1 27947 97 - 1
UUAUUAGCCU-UUGGUGGGCCCUGUCGUAAUUGAAAAGUUCCCAUCGAGGCGGG-UAGCCUUGUUGUGGCUGAACAGUUUAAUUAAUGCAUGGCAACUG
..........-..(((..(((.(((..((((((((..((((((((((((((...-..))))))..))))..))))..))))))))..))).))).))). ( -32.40)
>DroYak_CAF1 27743 99 - 1
UUAUUAGCCUUUUGGUGGGCCCUGUUCUAAUUGAAAAGUUCCCAUCGAGGCGGGUUAGCCUUGUUGUGGUUGAACAGUUUAAUUAAUGCGUGGCAACUG
......(((....)))..(((.(((..((((((((..((((((((((((((......))))))..))))..))))..))))))))..))).)))..... ( -33.20)
>DroAna_CAF1 24792 99 - 1
UUAUUGGCCUUUUGAUGGGCCAUAACAUAAUUGAAAAGUUCCCAUCGGGGCGGGUCAGUCUUGUUGUGGUAGAACAGUUUAAUUAAUGCCUGGCAACUG
....((((((......)))))).....((((((((..((((((((((((((......))))))..))))..))))..))))))))......(....).. ( -28.60)
>consensus
UUAUUAGCCUUUUGAUGGGCCCUAUCGUAAUUGAAAAGUUCCCAUCGAGGCGGGUUAGCCUUGUUGUGGUUGAACAGUUUAAUUAAUGCAUGGCAACUG
......((((......)))).......((((((((..((((((((((((((......))))))..))))..))))..))))))))......(....).. (-26.98 = -26.70 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:47 2006