Locus 7019

Sequence ID 3R_DroMel_CAF1
Location 18,491,646 – 18,491,746
Length 100
Max. P 0.581408
window11374

overview

Window 4

Location 18,491,646 – 18,491,746
Length 100
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 93.83
Mean single sequence MFE -21.55
Consensus MFE -18.92
Energy contribution -19.18
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.88
SVM decision value 0.10
SVM RNA-class probability 0.581408
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18491646 100 + 27905053
AUGGUUACUAGGCUAAAACCAAAAGUUGUUCAAAAUGCUC-AAGCGGCUUCCUUUUAGCAAAACUUUGUAGCCAAAACUUUUCCUGGAAGUGCACUUCAAA
.(((((((...(((((((....((((((((..........-.))))))))..)))))))........)))))))............((((....))))... ( -21.90)
>DroSec_CAF1 13057 99 + 1
AUGGUUACUAGGCUAAAACCAAAAGUUGUUCAAAAUGCUC-AAGCGGCUUCCUUUUAGCAAAACUUUGUAGCCA-AACUUUUCCUGGAAGUGCACUUCACA
.(((((((...(((((((....((((((((..........-.))))))))..)))))))........)))))))-...........((((....))))... ( -21.90)
>DroSim_CAF1 11276 99 + 1
AUGGUUACCAGGCUAAAACCAAAAGUUGUUCAAAAUGCUC-AAGCGGCUUCCUUUUAGCAAAACUUUGUAGCCA-AACUUUUCCUGGAAGUGCACUUCAAA
.(((((((...(((((((....((((((((..........-.))))))))..)))))))........)))))))-...........((((....))))... ( -21.20)
>DroYak_CAF1 14557 100 + 1
AUGGUUACCAGGAUAAAACCAAAAGUUGUUCAAAAUGCUCCGAGCGGCUUCCCUAAAGCAAAACUUCGUAGCCA-AACUUUUUGUGGAAGUGCACUUCAAA
.(((((((..((......))..(((((((((..........))))))))).................)))))))-...........((((....))))... ( -21.20)
>consensus
AUGGUUACCAGGCUAAAACCAAAAGUUGUUCAAAAUGCUC_AAGCGGCUUCCUUUUAGCAAAACUUUGUAGCCA_AACUUUUCCUGGAAGUGCACUUCAAA
.(((((((..((......)).((((((........(((.....)))(((.......)))..)))))))))))))............((((....))))... (-18.92 = -19.18 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:37 2006