Locus 7018

Sequence ID 3R_DroMel_CAF1
Location 18,490,722 – 18,490,821
Length 99
Max. P 0.531435
window11373

overview

Window 3

Location 18,490,722 – 18,490,821
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.75
Mean single sequence MFE -28.83
Consensus MFE -17.74
Energy contribution -17.49
Covariance contribution -0.25
Combinations/Pair 1.32
Mean z-score -1.57
Structure conservation index 0.62
SVM decision value -0.00
SVM RNA-class probability 0.531435
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18490722 99 + 27905053
CCUUCGCCAUUCAGCAAACGUCCUUCGGCCAGCAGCCUGUACUCCACCUCAACGUCCAGCU---CCUUCGCAUCGCAGAUGCAGGCCCAGCUGAAUGUCAAU
.....(.((((((((....(.....)((((((.(((.((.((...........)).)))))---.))..(((((...))))).))))..)))))))).)... ( -27.30)
>DroPse_CAF1 29508 102 + 1
CCUUCGCCGUUCAGCAAGCGGCCCUCGGCCAGCAGUCUCUACUCGACAUCCUCCUCCGGCACCACAUUCGGCGCCCAGGCGCAGGCCCAGCUGAAUGUCAAU
.....(.((((((((..((((((...)))).)).(((.......)))..(((.(.(((((.((......)).)))..)).).)))....)))))))).)... ( -34.20)
>DroEre_CAF1 12260 99 + 1
CCCUCGCCAUUCAGCAAACGUCCUUCGGCCAGCAGCCUGUACUCCACCUCAACGUCCAGCU---CCUUUGCCUCGCAGGUGCAGGCACAGCUGAAUGUCAAU
.....(.((((((((...((.....))(((.(((.(((((.....((......))...((.---.....))...)))))))).)))...)))))))).)... ( -28.80)
>DroWil_CAF1 33576 99 + 1
CCAUCUCCGUUCAGCAAACGGCCCUCGGCAAGCAGUCUAUAUUCGACCUCCUCAUCAGUUU---CUUUUAGCUCACAGACGCAGGCUCAGUUGAAUGUCAAU
.......((((((((.....(((...))).(((.((((......((.....))...((((.---.....))))...))))....)))..))))))))..... ( -18.60)
>DroAna_CAF1 27732 99 + 1
CCCUCCCCCUUCAGCAAACGCCCCUCGGCCAGCAGCCUCUACUCCACCUCCACGGGCUGUU---CCUUUGGCUCGCAGGCGCAGGCCCAGCUGAAUGUCAAU
.........((((((....(((((((((((((((((((...............))))))).---....)))).)).)))....)))...))))))....... ( -29.86)
>DroPer_CAF1 29960 102 + 1
CCCUCGCCGUUCAGCAAGCGGCCCUCGGCCAGCAGUCUCUACUCGACAUCCUCCUCCGGCACCACAUUCGGCGCCCAGGCGCAGGCCCAGCUGAAUGUCAAU
.....(.((((((((..((((((...)))).)).(((.......)))..(((.(.(((((.((......)).)))..)).).)))....)))))))).)... ( -34.20)
>consensus
CCCUCGCCGUUCAGCAAACGGCCCUCGGCCAGCAGCCUCUACUCCACCUCCACGUCCGGCU___CCUUCGGCUCGCAGGCGCAGGCCCAGCUGAAUGUCAAU
.......((((((((....(.....)((((.((.((((......................................)))))).))))..))))))))..... (-17.74 = -17.49 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:36 2006