| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,482,538 – 18,482,632 |
| Length | 94 |
| Max. P | 0.877254 |
| Location | 18,482,538 – 18,482,632 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 73.65 |
| Mean single sequence MFE | -33.21 |
| Consensus MFE | -16.47 |
| Energy contribution | -18.13 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18482538 94 - 27905053 GGCACCACUCGCCGCUGCGGCGGCACUUUGCUGGGCUCUGAAAUGAAAGAGAAGGCGGGGU-----UUGAAAGGUGGUGAGAGGCUGAGCAAAGGGUG-C .(((((.(((((((((....(((.((((((((...((((........))))..))))))))-----)))...)))))))))...((......))))))-) ( -39.00) >DroPse_CAF1 21879 86 - 1 CGCACUGCCACCCGCAGCGGCGCUGCUCUGCUGGGCCCUGAAAAGAGAGAGACACAGAGAU-----CACAG----GGUGAGUGGA-----AAAGGGUGAA ........((((((((((...)))))((..((.(.(((((.....................-----..)))----))).))..))-----...))))).. ( -29.30) >DroSec_CAF1 4221 83 - 1 CGCACCACCCGCCGCUGCGGCGGCACUUUGCUGGGCUCUGAAAUGAAAGAGAAG----------------GAGGUGGUGAGUGGAUGAGCAAAGGGUG-C .(((((....(((((....))))).(((((((.(.((((........))))...----------------...............).)))))))))))-) ( -30.51) >DroSim_CAF1 4194 92 - 1 CGCACCACUCGCCGCUGCGGCGGCACUUUGCUGGGCUCUGAAAUGAAAGAGAAGACGGG-------UAGAGAGGUGGUGAGUGGAUGAGCAAAGGGUG-C ..((((((((((((((((....)).(((((((.(.((((........))))....).))-------))))).)))))))))))).)).(((.....))-) ( -38.00) >DroYak_CAF1 4397 98 - 1 CGCACCACCCGCCGCUGCGGCGGCACUUUGCUGGGCUCUGAAAUGAAAGAGAAAGAGAGAGCGAAAGAGAA-GGUGGUGAAUGUAUGAAGAAAGGGUG-C ..(((((((.(((((....)))))..((((((...((((....(....)....))))..))))))......-)))))))...................-. ( -32.40) >DroPer_CAF1 22301 86 - 1 CGCACUACCACCCGCAGCGGCGCUGCUCUGCUGGGCCCUGAAAGGAGAGAGACACAGAGAU-----CACAG----GGUGAGUGGA-----AAAGGGUGAA ........((((((((((...)))))((..((.(.(((((....((..............)-----).)))----))).))..))-----...))))).. ( -30.04) >consensus CGCACCACCCGCCGCUGCGGCGGCACUUUGCUGGGCUCUGAAAUGAAAGAGAAACAGAGAU_____CAGAG_GGUGGUGAGUGGAUGAGCAAAGGGUG_C ..(((((((.(((((....)))))...........((((........)))).....................)))))))..................... (-16.47 = -18.13 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:34 2006