| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,478,822 – 18,478,939 |
| Length | 117 |
| Max. P | 0.545347 |
| Location | 18,478,822 – 18,478,939 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.12 |
| Mean single sequence MFE | -28.47 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.63 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18478822 117 - 27905053 UAGCUGGGAUUAAACAGCAUGUAAAGGGAAAUUUCCUUUAUAGUGAAGCACAAGAAUUUUACGUAUUUUUUUAUUGCAUCUGUUUAGUUUCAGUUUCAGGAA-AUC--UUCGGUUUCCUU .(((((..(((((((((.(((((((((((....))))))...((((((........))))))............))))))))))))))..)))))..(((((-(.(--....))))))). ( -37.30) >DroSec_CAF1 647 114 - 1 AAGCUGGGAUUAAACACCAUGUAAAGGGAAAGUUCCUUUAUAGUGGAGAACAAGAAUUUUACGUAUUUAUUUAUUGCAUCUGUUUAGUUUC------AGGAAAAUCCUUUACGUUUGCGC ...(((..(((((((((((((((((((((...)))))))))).)))................(((.........)))...))))))))..)------))..................... ( -26.10) >DroYak_CAF1 676 107 - 1 ACGCUUGGAUUAAAAACCAUGUAAAGGAAAAGUUCCUUUAUGGUGA---GCAGGAAUUUUGCGUAUUUUUUUAUUAUGCCAGUUUAGUUUC------AGGAAAAGC--UUC--UUUUCUU ..((((((........))..((((((((.....))))))))...))---)).((((((..(((((.........)))))......))))))------((((((((.--..)--))))))) ( -22.00) >consensus AAGCUGGGAUUAAACACCAUGUAAAGGGAAAGUUCCUUUAUAGUGAAG_ACAAGAAUUUUACGUAUUUUUUUAUUGCAUCUGUUUAGUUUC______AGGAAAAUC__UUC_GUUUCCUU .....(((((((((((...((((((((((...))))))))))((((((........))))))..................)))))))))))............................. (-14.85 = -15.63 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:33 2006