Locus 7013

Sequence ID 3R_DroMel_CAF1
Location 18,477,193 – 18,477,294
Length 101
Max. P 0.619738
window11366

overview

Window 6

Location 18,477,193 – 18,477,294
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.84
Mean single sequence MFE -30.16
Consensus MFE -21.36
Energy contribution -21.76
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.71
SVM decision value 0.18
SVM RNA-class probability 0.619738
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18477193 101 - 27905053
GUACCUUUUUCCAGAUCAAUUACGGAUUAACUGUCAAGUUUAUUGGUGUGCAAAAGGGGGA-AAGGCAAUCCCCG------------------GAUUUACCGACAAUGCGCACAGCAUUA
...(((((..((........(((.(((.((((....)))).))).)))........))..)-)))).......((------------------(.....)))..(((((.....))))). ( -25.99)
>DroSec_CAF1 32333 102 - 1
GUACCUUUUUCCAGAUCAAUUACGGAUUAACUGUCAAGUUUAUUGGUGUGCAAAAGGGGGA-AAGGUAAUCCCCG-----------------GGAAUCCCCGACAAUGCGCACAGCAUUA
.(((((((..((........(((.(((.((((....)))).))).)))........))..)-)))))).....((-----------------((....))))..(((((.....))))). ( -32.79)
>DroSim_CAF1 32035 102 - 1
GUACCUUUUUCCAGAUCAAUUACGGAUUAACUGUCAAGUUUAUUGGUGUGCAAAAGGGGGA-AAGGUAAUCCCCG-----------------GGAAUCCCCGACAAUGCGCACAGCAUUA
.(((((((..((........(((.(((.((((....)))).))).)))........))..)-)))))).....((-----------------((....))))..(((((.....))))). ( -32.79)
>DroEre_CAF1 32406 119 - 1
GUACCUUUUUCCAGAUCAAUUACGGAUUAACUGUCAAGUUUAUUGGUGUGCAAAAGGGGGA-AAGGUAAUCCCCGGAAUCCCCAGAAUCCCCGGAAUCCCCGACAAUGCUCACAGCAUAA
.(((((((..((........(((.(((.((((....)))).))).)))........))..)-)))))).(((..(((.((....)).)))..)))..........((((.....)))).. ( -31.49)
>DroYak_CAF1 33619 102 - 1
GUACCUUUUUCCAGAUCAAUUACGGAUUAACUGUCAAGUUUAUUGGUGUGCAAAAGGGGGAAAAGGUAAUCCCC------------------GGAAUACCCGACAAUGCUCACAGCAUAA
.(((((((((((........(((.(((.((((....)))).))).))).........))))))))))).....(------------------((.....)))...((((.....)))).. ( -27.73)
>consensus
GUACCUUUUUCCAGAUCAAUUACGGAUUAACUGUCAAGUUUAUUGGUGUGCAAAAGGGGGA_AAGGUAAUCCCCG_________________GGAAUCCCCGACAAUGCGCACAGCAUUA
....(((((..((.((((((.((.(((.....)))..))..)))))).)).)))))(((((........)))))..............................(((((.....))))). (-21.36 = -21.76 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:30 2006