Locus 7012

Sequence ID 3R_DroMel_CAF1
Location 18,476,989 – 18,477,087
Length 98
Max. P 0.555132
window11365

overview

Window 5

Location 18,476,989 – 18,477,087
Length 98
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.80
Mean single sequence MFE -30.25
Consensus MFE -16.79
Energy contribution -17.32
Covariance contribution 0.53
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.56
SVM decision value 0.04
SVM RNA-class probability 0.555132
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18476989 98 - 27905053
--CUCAGGAUACGGGGACUCAAACUCAAAU------UCACAUGCAGAAGGCAGU-AGACAGUCGAGC------------UGUCCCUGUGUGCGACAUUCAUCCUUGACAAA-GGAUAAGG
--....(.((((((((((.....(((....------((((.(((.....)))))-.)).....))).------------.)))))))))).).......((((((....))-)))).... ( -28.70)
>DroSec_CAF1 32126 104 - 1
--CUCAGGACACGGGGACUCAAACUCAAACUCAAGCUCACAUGCAGAAGGCAGA-AGACAGUCGAGC------------UGUCCCUGUGUGCGACAUUCAUCCUUGACAAA-GGAUAAGG
--....(.((((((((((...............(((((...(((.....)))((-......))))))------------))))))))))).).......((((((....))-)))).... ( -32.86)
>DroSim_CAF1 31828 104 - 1
--CUCAGGACACGGGGACUCAAACUCAAACUCGAGCUCACAUGCAGAAGGCAGA-AGACAGUCGAGC------------UGUCCCUGUGUGCGACAUUCAUCCUUGACAAA-GGAUAAGG
--....(.((((((((((......((......))((((...(((.....)))((-......))))))------------.)))))))))).).......((((((....))-)))).... ( -33.50)
>DroEre_CAF1 32224 80 - 1
--CUCAGGACCCAG-GACUCAAACUCAAAC------UCACAUGCAG---GC----------------------------UGUCCCUGUGUGCGACAUUUAUCCUUGACAAAGGGAUAAGG
--........((..-...............------((.(((((((---(.----------------------------....)))))))).))...((((((((.....)))))))))) ( -20.10)
>DroYak_CAF1 33392 110 - 1
GUCUCAGGACACGG-GACUGAAACUCAAAC------UCACAUGCAG---GCAGUGAGACAGUGAAGCUCUGUGUCUCUGUGUCUCUGUGUGCGACAUUCAUCCUUGACAAAAGGAUAAGA
(((.((((((((((-(((...........(------((((.((...---.)))))))((((.......))))))).))))))).))).....)))....((((((.....)))))).... ( -36.10)
>consensus
__CUCAGGACACGGGGACUCAAACUCAAAC______UCACAUGCAGAAGGCAGA_AGACAGUCGAGC____________UGUCCCUGUGUGCGACAUUCAUCCUUGACAAA_GGAUAAGG
......(.((((((((((.......................(((.....)))(.....).....................)))))))))).).......((((((....)).)))).... (-16.79 = -17.32 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:29 2006