Locus 7011

Sequence ID 3R_DroMel_CAF1
Location 18,475,665 – 18,475,785
Length 120
Max. P 0.998512
window11364

overview

Window 4

Location 18,475,665 – 18,475,785
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.83
Mean single sequence MFE -43.58
Consensus MFE -40.10
Energy contribution -40.10
Covariance contribution 0.00
Combinations/Pair 1.05
Mean z-score -2.37
Structure conservation index 0.92
SVM decision value 3.13
SVM RNA-class probability 0.998512
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18475665 120 + 27905053
GUGUUCGCUGGCAAAUUGUUAUUUAAUUAUGGCAUCCUUGCCAUCCGAUGUUGAGACGCAACCGGUCACGUUCCGGCGUUCCGGUAAUGGCGAAUAAAUCAACAGCGGAAGCGUUGCAAG
.(((.(((((((((..((((((......))))))...))))).((((.((((((..(((.(((((..((((....)))).)))))....)))......)))))).))))))))..))).. ( -45.00)
>DroSec_CAF1 30839 120 + 1
GUGUUCGCUGGCAAAUUGUUAUUUAAUUAUGGCAUCCUUGCCAUCCGAUGCUGAGACGCAACCGGUCACGUUCCGGCGUUCCGGUAAUGGCGAAUAAAUCAACAGCGGAAGCGUUGCAAG
.(((((((((((((..((((((......))))))...)))))......(((((..((((...(((.......)))))))..)))))..))))))))...((((.((....)))))).... ( -42.90)
>DroSim_CAF1 30493 120 + 1
GUGUUCGCUGGCAAAUUGUUAUUUAAUUAUGGCAUCCUUGCCAUCCGAUGUUGAGACGCAACCGGUCACGUUCCGGCGUUCCGGUAAUGGCGAAUAAAUCAACAGCGGAAGCGUUGCAAG
.(((.(((((((((..((((((......))))))...))))).((((.((((((..(((.(((((..((((....)))).)))))....)))......)))))).))))))))..))).. ( -45.00)
>DroEre_CAF1 30962 120 + 1
GUGUUCGCCGGCAAAUUGUUAUUUAAUUAUGGCAUCCUGGCCGCCCGAUGCUGAGACGCAACCGGUCACGUUCCGGCGUUCCGGUAAUGGCGAAUAAAUCAACAGCGGAAGCGUUGCAAG
.(((((((((((....((((((......)))))).....)))......(((((..((((...(((.......)))))))..)))))..))))))))...((((.((....)))))).... ( -43.90)
>DroYak_CAF1 32017 120 + 1
GUGUUCGCUGGCAAAUUGUUAUUUAAUUAUGGCAUCCUGGCCACCCGAUGCUGAGACGCAACCGGUCACGUUCCGGCGUUCCGGUAAUGGCGAAUAAAUCAACAGCGGAAGCGUUGCAAG
.(((((((((((....((((((......)))))).....)))......(((((..((((...(((.......)))))))..)))))..))))))))...((((.((....)))))).... ( -41.10)
>consensus
GUGUUCGCUGGCAAAUUGUUAUUUAAUUAUGGCAUCCUUGCCAUCCGAUGCUGAGACGCAACCGGUCACGUUCCGGCGUUCCGGUAAUGGCGAAUAAAUCAACAGCGGAAGCGUUGCAAG
.(((((((((((((..((((((......))))))...)))))......(((((..((((...(((.......)))))))..)))))..))))))))...((((.((....)))))).... (-40.10 = -40.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:28 2006