| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,475,130 – 18,475,226 |
| Length | 96 |
| Max. P | 0.907492 |
| Location | 18,475,130 – 18,475,226 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.62 |
| Mean single sequence MFE | -18.58 |
| Consensus MFE | -4.02 |
| Energy contribution | -5.18 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.22 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.907492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18475130 96 - 27905053 ------AAAAGCAUCUUAAAGAU-----------------UGCAAGUAUCUAA-AGUAGAUAUCUUUAUUUUAGAUAGCUUUUUUAUUAGCUGCUUGAUAUUCUUUUUCUACUACCACUA ------...........(((((.-----------------(((((((((((((-((((((....))))))))))))((((........))))))))).)).))))).............. ( -20.20) >DroSec_CAF1 30288 102 - 1 UAUUUAAAAAGCAUCUUUAAGAU-----------------GGCAAGUAUCUAA-AGUAGAUAUCUUUAUUUUAUAUAGCUUCUUUAUUAGCUGCUUGAUAUUCUUUUUCCACUACCACUA .....((((((((((.....)))-----------------).(((((...(((-((((((....)))))))))...((((........))))))))).....))))))............ ( -15.70) >DroSim_CAF1 29974 102 - 1 UAUUUGAAAAGCAUCUUAAAGAU-----------------UGCAAGUAUCUAA-AGUAGAUAUCUUUAUUUUAUAUAGCUUCUUUAUUAGCUGCUUGAUAUUCUUUUUGCACUACCACUA ..........(((....(((((.-----------------(((((((...(((-((((((....)))))))))...((((........))))))))).)).))))).))).......... ( -18.70) >DroEre_CAF1 30435 117 - 1 CCUGUUGAAAGCACUUUAAAGACGCCUCGCACAUCCAAAGUGCAAGUAUCUAAUAGCAGACAUCUUUAUAGCUUA-AGCUUCUUUAUUAGCUGGUGGAUAUUUUCUUU--ACAACCACUA ...((((...(((((((......((...))......)))))))(((((((((.((((((....))....(((...-.))).........)))).))))))))).....--.))))..... ( -23.50) >DroYak_CAF1 31381 114 - 1 C---UUAAAAGUAUCUUAAAGAUACCUCGAACAUCUAAACUGCAAGUAUCUAACAGUAGAC-UUUGUAUAGCAUAUACCUCCCUUAUUAGCUGAUAGAUAUUUUCUUU--ACCACCACUA .---......(((((.....)))))................(.(((((((((.((((((..-...(((((...)))))....)).....)))).))))))))).)...--.......... ( -14.80) >consensus C_U_UUAAAAGCAUCUUAAAGAU_________________UGCAAGUAUCUAA_AGUAGAUAUCUUUAUUUUAUAUAGCUUCUUUAUUAGCUGCUUGAUAUUCUUUUU__ACUACCACUA .................(((((.......................(((((((....)))))))............(((((........)))))..........)))))............ ( -4.02 = -5.18 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:27 2006