Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,496,824 – 2,496,918 |
Length | 94 |
Max. P | 0.514494 |
Location | 2,496,824 – 2,496,918 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 75.31 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -13.56 |
Energy contribution | -13.87 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.10 |
Mean z-score | -1.70 |
Structure conservation index | 0.50 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514494 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2496824 94 - 27905053 UGCC-CGAGCGGACAUUUGGUGCAAAC-----AGUGCGCCAAAA-------GCGGAGGAUACGGAUAUCUUAUCUGCUGUUUGCAUUCGCUUGGCGUUGGCCCAAGG .(((-((((((((..(((((((((...-----..)))))))))(-------((((((((((....)))))..)))))).......))))))))).)).......... ( -35.60) >DroVir_CAF1 59846 77 - 1 UGCC-UUUUUGGACAUUUCGUGCAAAC-----AGUGCGCCAAGC-------GAGGA------GGAUAUCUUAUCUUUUGUUUGCAUUCG-----------CAUAAGG ..((-((..((((......((((((((-----..(((.....))-------).(((------(((((...)))))))))))))))))).-----------)).)))) ( -18.00) >DroPse_CAF1 22876 96 - 1 UGCCUUGAAUGGACAUUUGGUGCAAACAGAACAGUGCGCCAAAAGCCAAACGCGGAGGAUACGGAUAUCUUAUCUGGUGUUUGCAUUCG-----------UCCAAGG ..(((((.(((((..(((((((((..........))))))))).((.((((((...(((((.((....))))))).)))))))).))))-----------).))))) ( -31.30) >DroGri_CAF1 56696 73 - 1 UGCC-UU-UUGGACAUUUCGUGCAAAC-----AUUGCGCCAAAC-------G---A------GGAUAUCUUAUCUUUUGUUUGCAUUCG-----------CAUAAGG ..((-((-.((((......(((((...-----..)))))(((((-------(---(------(((((...)))).))))))))...)).-----------)).)))) ( -16.80) >DroAna_CAF1 22902 89 - 1 UGCCUUGAACGGACAUUUGGUGCAAAC-----AGUGCGCCAAAA-------GCGGAGGAUACGGAUAUCUUAUCUGCUGUUUGCAUUCGG------UUGGCCCAAGG ..(((((..(((((.(((((((((...-----..)))))))))(-------((((((((((....)))))..))))))))))).....((------....))))))) ( -31.20) >DroPer_CAF1 22990 96 - 1 UGCCUUGAAUGGACAUUUGGUGCAAACAGAACAGUGCGCCAAAAGCCAAACGCGGAGGAUACGGAUAUCUUAUCUGGUGUUUGCAUUCG-----------UCCAAGG ..(((((.(((((..(((((((((..........))))))))).((.((((((...(((((.((....))))))).)))))))).))))-----------).))))) ( -31.30) >consensus UGCC_UGAAUGGACAUUUGGUGCAAAC_____AGUGCGCCAAAA_______GCGGAGGAUACGGAUAUCUUAUCUGCUGUUUGCAUUCG___________CCCAAGG .........(((((((((((((((..........)))))))))..................((((((...)))))).))))))........................ (-13.56 = -13.87 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:46 2006