Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,474,242 – 18,474,343 |
Length | 101 |
Max. P | 0.916830 |
Location | 18,474,242 – 18,474,343 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.18 |
Mean single sequence MFE | -23.26 |
Consensus MFE | -14.87 |
Energy contribution | -17.27 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.12 |
Mean z-score | -2.03 |
Structure conservation index | 0.64 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18474242 101 + 27905053 --------GUCAGCUUAUAACUAAAACCAUUUUGGUUGUUCCAGACAAAUUAGGGUGCGAAUUACACAAACGCCUAUCCAAUUCCAAUGUCCUGGCUGGCACACACACA --------((((((..(((((((((.....)))))))))..((((((((((.(((((((...........)))..))))))))....))).)))))))))......... ( -23.30) >DroSec_CAF1 29428 101 + 1 --------GCCAGCUUAUAACCAAAACCAUUUUGGCUGUUUCAGACAAAUUAGGGUGGGAAUUACACAAACGCCUAUCCAAUUCCAACGUCCUGGCUGGCUCACACACA --------((((((..(((.(((((.....))))).)))..(((((.((((.(((((((..((.....))..))))))))))).....)).)))))))))......... ( -25.90) >DroSim_CAF1 29106 101 + 1 --------GUCAGCUUAUAACCAAAACCAUUUUGGUUGUUUCAGACAAAUUAGGGUGGGAAUUACACAAACGCCUAUCCAAUUCCAACGUCCUGGCUGGCACACACACA --------((((((..(((((((((.....)))))))))..(((((.((((.(((((((..((.....))..))))))))))).....)).)))))))))......... ( -27.90) >DroEre_CAF1 29655 97 + 1 ----UCAAGUCCGCUCAUAGCCAAAACCAUUUUGGUUGUUCCAGACAAAUUAGGG--GGUAUUACACAAACGCCCAACCAAUUCCAAAGUCCUGGCA------GACGCA ----....(((.((..(((((((((.....)))))))))..(((((.((((.(((--((..((.....))..)))..)))))).....)).))))).------)))... ( -20.70) >DroYak_CAF1 30521 91 + 1 AAGCUUAAGUCAGCUUAUAACCAAAACCAUUUUGCUUGUUCCACGCAAAUUAGGGAAGGAAUUACACA------------------AUGUCCUGGCUGGCACACACACA ........(((((((...........((..(((((.((...)).)))))....)).(((((((....)------------------)).)))))))))))......... ( -18.50) >consensus ________GUCAGCUUAUAACCAAAACCAUUUUGGUUGUUCCAGACAAAUUAGGGUGGGAAUUACACAAACGCCUAUCCAAUUCCAACGUCCUGGCUGGCACACACACA ........((((((..(((((((((.....)))))))))...........(((((..((((((................))))))....)))))))))))......... (-14.87 = -17.27 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:24 2006