Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,472,920 – 18,473,040 |
Length | 120 |
Max. P | 0.938546 |
Location | 18,472,920 – 18,473,040 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.85 |
Mean single sequence MFE | -33.39 |
Consensus MFE | -30.78 |
Energy contribution | -30.79 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.11 |
Mean z-score | -2.36 |
Structure conservation index | 0.92 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938546 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18472920 120 + 27905053 UUUUUUGGUUAUUGUUGCUCAUCGUUGGUUGGCUUCUUUGUUGGCUUGUUUGUUUUUCGCCAGCUGCAUGCAGCCAGCCAUGAAAUCUGUGCAACCUUUGCCCCACCAUCCAACAUCCAC ......(((....(((((.((((((.((((((((.(...((((((.............)))))).....).))))))))))))....)).)))))....))).................. ( -35.02) >DroSec_CAF1 28141 116 + 1 ---UUUUGUUAUUGUUGCUCAGCGUUGGUUGGCUUCUUUGUUGGCUUGUUUGUUUUUCGCUAGCUGCAUGCAGCCAGCCAUGAAAUCUGUGCAACCUUUGGCACAACAUCCACCCACC-C ---...(((((..(((((.(((...(((((((((.(...((((((.............)))))).....).)))))))))......))).)))))...)))))...............-. ( -33.82) >DroSim_CAF1 27849 116 + 1 ---UUUUGUUAUUGUUGCUCGACGUUGGUUGGCUUCUUUGUUGGCUUGUUUGUUUUUCGCCAGCUGCAUGCAGCCAGCCAUGAAAUCUGUGCAACCUUUGGCCCAACAUCCACCCACC-C ---....((((..(((((.(((...(((((((((.(...((((((.............)))))).....).))))))))).....)).).)))))...))))................-. ( -31.32) >consensus ___UUUUGUUAUUGUUGCUCAACGUUGGUUGGCUUCUUUGUUGGCUUGUUUGUUUUUCGCCAGCUGCAUGCAGCCAGCCAUGAAAUCUGUGCAACCUUUGGCCCAACAUCCACCCACC_C ......(((((..(((((.((....(((((((((.(...((((((.............)))))).....).))))))))).......)).)))))...)))))................. (-30.78 = -30.79 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:19 2006