| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,472,195 – 18,472,309 |
| Length | 114 |
| Max. P | 0.512830 |
| Location | 18,472,195 – 18,472,309 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.19 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -16.47 |
| Energy contribution | -16.37 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18472195 114 - 27905053 GAAAGGGAGAAGGGAAAGGGAGAAGUGGAAGGGGGGAUCCUUGAAAAAUUACAUGCUUUUAAAUUGAAAUUUCAGACUGAAAGCAGAAGCGAAGCACGAAACAGGCCGUGGAUA ............((....(.....(((.(((((....)))))...........((((((((..((((....))))..)))))))).........)))....)...))....... ( -18.20) >DroSec_CAF1 27441 94 - 1 GGAAG-------------------CCGGAAGGCGGGGGCCUUGAAAAAUUACAUGCUUUUAAAUUGAAAUUUCAGACUGAAAGCAAAAGCGGAGCACGAAUUA-GCCGAGGGUA ....(-------------------((....)))...(.(((((..........((((((((..((((....))))..))))))))....((.....)).....-..))))).). ( -24.70) >DroSim_CAF1 27155 94 - 1 GGGAG-------------------CCGGAAGGAGGGGGCCUUGAAAAAUUACAUGCUUUUAAAUUGAAAUUUCAGACUGAAAGCAGAAGCGGAGCACGAAAUA-GCCGAGGAUA .....-------------------((....))......(((((..........((((((((..((((....))))..))))))))....((.....)).....-..)))))... ( -20.40) >consensus GGAAG___________________CCGGAAGGAGGGGGCCUUGAAAAAUUACAUGCUUUUAAAUUGAAAUUUCAGACUGAAAGCAGAAGCGGAGCACGAAAUA_GCCGAGGAUA .........................((((((((....)))))...........((((((((..((((....))))..))))))))....................)))...... (-16.47 = -16.37 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:18 2006