Locus 7001

Sequence ID 3R_DroMel_CAF1
Location 18,467,963 – 18,468,070
Length 107
Max. P 0.582567
window11349

overview

Window 9

Location 18,467,963 – 18,468,070
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.27
Mean single sequence MFE -33.54
Consensus MFE -23.90
Energy contribution -24.38
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -2.06
Structure conservation index 0.71
SVM decision value 0.10
SVM RNA-class probability 0.582567
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18467963 107 + 27905053
AUGCAUUCUGCGGCUUGGCAGAGAUUUAUGCAGGCAUUUCAUAAAGCUGACAACAUGGCGUAUGAUUAAUAUC-------GCUGCCUGUUCCCU------GAAUUGCUAUUAUGCUGCAU
........((((((.((((((........((((((...(((......)))......(((((((.....))).)-------))))))))).....------...))))))....)))))). ( -30.49)
>DroSec_CAF1 23202 107 + 1
AUGCAUUUAGCGGCUUGGCAGAGAUUUAUGCAGGCAUUUCAUAAAGCUGACAACAUGGCGUAUGAUUAAUAUC-------GCUGCCUGCUCCCU------GGAUUGUUAUUUUGCUGCAU
.........(((((.((((((........((((((...(((......)))......(((((((.....))).)-------)))))))))((...------.))))))))....))))).. ( -29.30)
>DroSim_CAF1 22937 107 + 1
AUGCAUUCAGCGGCUUGGCAGAGAUUUAUGCAGGCAUUUCAUAAAGCUGACAACAUGGCGUAUGAUUAAUAUC-------GCUGCCUGCUCGCU------GGAUUGUUAUUUUGCUGCAU
((((((((((((((..(((((.(((((((((.(.(((.(((......)))....))).))))))).....)))-------.))))).)).))))------)))..((......))))))) ( -32.80)
>DroEre_CAF1 23578 119 + 1
AUGCAUUCUGCGGCUUGGCAGAGAUUUAUGCAGGCUUUUCAUAAAGCUGACAACAUGGCGUAUGAUUAAUAUCAUGGGGAGCUGCC-GCUCCCUGGCCGUGGAUUGUUAUUUUGCUGCAU
.....((((((......))))))....(((((((((((....)))))(((((.((((((..(((((....)))))(((((((....-))))))).))))))...))))).....)))))) ( -46.80)
>DroYak_CAF1 23999 107 + 1
AUGCAUUUUGCCGCUUGGCAGAGAUUUAUGCAGGCUUUUCAUAAAGCUGACAACAUGGCGUAUGAUUAAUAUC-------GCUGCCUGCUCCCU------GGAUUGUUAUUUUGCUGCAU
(((((.((((((....))))))((((((.((((((...(((......)))......(((((((.....))).)-------)))))))))....)------)))))..........))))) ( -28.30)
>consensus
AUGCAUUCUGCGGCUUGGCAGAGAUUUAUGCAGGCAUUUCAUAAAGCUGACAACAUGGCGUAUGAUUAAUAUC_______GCUGCCUGCUCCCU______GGAUUGUUAUUUUGCUGCAU
.........(((((.((((((........((((((...(((((..(((........))).)))))..................))))))(((........)))))))))....))))).. (-23.90 = -24.38 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:13 2006