| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,466,140 – 18,466,243 |
| Length | 103 |
| Max. P | 0.984350 |
| Location | 18,466,140 – 18,466,243 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.40 |
| Mean single sequence MFE | -24.04 |
| Consensus MFE | -20.06 |
| Energy contribution | -20.14 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.984350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18466140 103 + 27905053 AAAUUCAUGGCCCAGACGAUGCUGCCG--CGCUAUUCAGGCAGCAAACAUUGUCAUAAAACCUCGGCCCAUUCACGCCAUAUUUCAUUUCA--UCUCCUC-------------AUCUCCA ......(((((...((((((((((((.--.........)))))))....)))))......(....).........)))))...........--.......-------------....... ( -21.80) >DroSec_CAF1 21442 103 + 1 AAAUUCAUGGCCCAGACGAUGUUGCCG--CGCUAUUCAGGCAGCAAGCAUUGUCAUAAAACCUCGACUCAUUCACGCCAUAUUUUAUUUCA--UCUCCUC-------------AGCUCCA ......(((((...(((((((((((.(--(.((....)))).)).)))))))))..........((.....))..)))))...........--.......-------------....... ( -22.40) >DroSim_CAF1 21152 111 + 1 AAAUUCAUGGCCCAGACGAUGCUGCCG--CGCUAUUCAGGCAGCAAGCAUUGUCAUAAAACCUCGACCCAUUCACGCCAUAUUUCAUUUCA--UCUCCUCAG-----CUCCUCAGCUCCA ......(((((...(((((((((((.(--(.((....)))).)).)))))))))..........((.....))..)))))...........--.......((-----((....))))... ( -26.80) >DroEre_CAF1 21812 120 + 1 AAAUUCAUGGCCCAGACGAUGCUGCCGCUCGCUAUUCAGGCAGCAAACAUUGUCAUAAAACCUCGACCCAUUCGCGCCAUAUUUCAUCUUGCGUUUCGUCAGGACACCGCCUCAACCUCA ........(((...((((((((((((............)))))))....)))))......(((.(((.....((((.............))))....)))))).....)))......... ( -29.22) >DroYak_CAF1 22170 113 + 1 AAAUUCAUGGCCCAGACGUUGCUGCCG----CUAUUCAGCCAGCAAACAUUGUCAUAAAACCUCGACCCAUUCACGCCAUAUUUCAUCUCGCGUCUCGACAAGACUCCUCCUCAUCC--- ......(((((...((((((((((..(----((....)))))))))....))))..........((.....))..)))))............((((.....))))............--- ( -20.00) >consensus AAAUUCAUGGCCCAGACGAUGCUGCCG__CGCUAUUCAGGCAGCAAACAUUGUCAUAAAACCUCGACCCAUUCACGCCAUAUUUCAUUUCA__UCUCCUCA______C_CCUCAGCUCCA ......(((((...((((((((((((............)))))))....)))))..........((.....))..)))))........................................ (-20.06 = -20.14 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:11 2006