Locus 6996

Sequence ID	3R_DroMel_CAF1
Location	18,457,169 – 18,457,259
Length	90
Max. P	0.521812

overview

Window 2

Location	18,457,169 – 18,457,259
Length	90
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	78.98
Mean single sequence MFE	-25.36
Consensus MFE	-14.50
Energy contribution	-14.82
Covariance contribution	0.32
Combinations/Pair	1.11
Mean z-score	-1.73
Structure conservation index	0.57
SVM decision value	-0.02
SVM RNA-class probability	0.521812
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18457169 90 - 27905053
AACUGGAAUCGAAGUGUUCCCUCAGGAACUUCUAAAGAUUAGAGUGCCCAUGAGUGGUCA---CGAUUCUCGUGUGUCUUUGCUGAUACAUAU
....((((((...(((..((((((((.(((.(((.....))))))..)).)))).)).))---))))))).(((((((......))))))).. ( -26.80)
>DroSec_CAF1 12626 93 - 1
AACUGGAAUUGAAGUGCUCCCUCAGGAACUUCUAAAGAUUAGAGUGCCCAUGAGUGGUCACGACGAUUCUCGUGUGUCUUCGCUGAUACAUAU
....(((((((..(((..((((((((.(((.(((.....))))))..)).)))).)).)))..))))))).(((((((......))))))).. ( -30.40)
>DroSim_CAF1 12162 83 - 1
AACUGGAAUCGAAGUGUUCCCUCAGGAACUUCAAAAGAUUAGAG----------UGGUCACGACGAUUCUCGUGUGUCUUCGCUGAUACAUAU
....(((((((..(((..(((((..((.((.....)).)).)))----------.)).)))..))))))).(((((((......))))))).. ( -23.90)
>DroEre_CAF1 13020 88 - 1
GCCUGGAGCUGACGUGCUCCCUUAGGAACUUCAAAAGAUUAGAGUGC-CAUGAGUGGUCA---CGAUUCUCGUGUGUCU-CGCUGAUACAUAC
.((((((((......)))))...)))..........((..(..((((-((....))).))---)..)..))(((((((.-....))))))).. ( -25.40)
>DroYak_CAF1 13062 72 - 1
ACCUGGAGUUGACGUGCUCCCUU-----------------AGAGUGC-CAUGAGUGGUCA---CGAUUCUCGUGUGUCUUAGCUGAUACAUAC
....(((((......)))))...-----------------...((((-((....))).))---).......(((((((......))))))).. ( -20.30)
>consensus
AACUGGAAUUGAAGUGCUCCCUCAGGAACUUCAAAAGAUUAGAGUGC_CAUGAGUGGUCA___CGAUUCUCGUGUGUCUUCGCUGAUACAUAU
....(((((......)))))...............................(((.((((.....)))))))(((((((......))))))).. (-14.50 = -14.82 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:06 2006