Locus 6995

Sequence ID 3R_DroMel_CAF1
Location 18,449,295 – 18,449,391
Length 96
Max. P 0.978633
window11341

overview

Window 1

Location 18,449,295 – 18,449,391
Length 96
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 92.63
Mean single sequence MFE -24.37
Consensus MFE -23.51
Energy contribution -23.48
Covariance contribution -0.02
Combinations/Pair 1.14
Mean z-score -1.41
Structure conservation index 0.96
SVM decision value 1.82
SVM RNA-class probability 0.978633
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18449295 96 - 27905053
AUAGAAUGAUGGGUUUAGGAGUGGAAUUCAUUAAUCUCUCGCC--AUAAGGGGAUGGCGCACAAAAGCUGUCGUUAAACGAAAAGUCGGUGGGAAAUG---
...((.((((((((((.......)))))))))).))(((((((--....((.((((((........)))))).))....((....)))))))))....--- ( -25.60)
>DroSec_CAF1 4802 96 - 1
AUAGAAUGAUGGGUUAAGGAGUGGAAUUCAUUAAUCUCUCGCC--AUAAGGGGAUGGCGCACAAAAGCUGUCGUUAAACGAAAAGUCGGUGGGAAAUG---
...((.(((((((((.........))))))))).))(((((((--....((.((((((........)))))).))....((....)))))))))....--- ( -23.80)
>DroSim_CAF1 4333 96 - 1
AUAGAAUGAUGGGUUUAGGAGUGGAAUUCAUUAAUCUCUCGCC--AUAAGGGGAUGGCGCACAAAAGCUGUCGUUAAACGAAAAGUCGGUGGGAAAUG---
...((.((((((((((.......)))))))))).))(((((((--....((.((((((........)))))).))....((....)))))))))....--- ( -25.60)
>DroEre_CAF1 4861 96 - 1
AUAGAAUGAUGGGCUUAGGAGUGGAAUUCAUUAAUCUCUCGCC--AUAAGGGGAUGGCGCACAAAAGCUGUCGUUAAACGAAAAGUCGGUGGGAAAUG---
...((.(((((((.((.......)).))))))).))(((((((--....((.((((((........)))))).))....((....)))))))))....--- ( -21.60)
>DroYak_CAF1 4924 96 - 1
AUAGAAUGAUGGGUUUAGGAGUGGAAUUCAUUAAUCUCUCGCC--UGAAGGGGAUGGCGCACAAAAGCUGUCGUUAAACGAAAAGUCGGUGGGAAAUG---
...((.((((((((((.......)))))))))).))(((((((--....((.((((((........)))))).))....((....)))))))))....--- ( -25.10)
>DroAna_CAF1 5310 101 - 1
AUAGAAUGAUGUGUUCGGUCAUGGAAUUCAUUAAUCUCCCAUCCAACAAGGGGAUGGCGUACAAAAGCUGUCGUUAAGCGAAAAGUCGGUGGGAAGUGCCG
...((.(((((.((((.......)))).))))).))(((((((......((.((((((........)))))).))....((....)))))))))....... ( -24.50)
>consensus
AUAGAAUGAUGGGUUUAGGAGUGGAAUUCAUUAAUCUCUCGCC__AUAAGGGGAUGGCGCACAAAAGCUGUCGUUAAACGAAAAGUCGGUGGGAAAUG___
...((.((((((((((.......)))))))))).))(((((((......((.((((((........)))))).))....((....)))))))))....... (-23.51 = -23.48 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:05 2006