Locus 6992

Sequence ID 3R_DroMel_CAF1
Location 18,445,425 – 18,445,519
Length 94
Max. P 0.871321
window11334

overview

Window 4

Location 18,445,425 – 18,445,519
Length 94
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 72.88
Mean single sequence MFE -28.58
Consensus MFE -16.71
Energy contribution -16.60
Covariance contribution -0.11
Combinations/Pair 1.32
Mean z-score -1.64
Structure conservation index 0.58
SVM decision value 0.87
SVM RNA-class probability 0.871321
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18445425 94 + 27905053
GCCGUCCCUGGCCAUUUGAUUGUACUUUUUGUGGGCCGCCUGGCGGCUCAGAAGAAUGCGUGUUAACAUUGCCUAAUGAUUUUUGAGU---C---------GCCAU-
.........((((....((........))....))))...((((((((((((((.(((((((....)).)))...))..)))))))))---)---------)))).- ( -28.40)
>DroGri_CAF1 6605 104 + 1
ACCCACAUUGGCCAUUUGAUUGUACUUUUUGUGGGCUGCCUGGCGGCUCAGAAGAUUACACGUUAACGUUGUUCAAUGAUG-UUGAGGAUA-AGGAACCAAACCAC-
.......((((((.......((((..((((.((((((((...)))))))).)))).))))(.(((((((..(...)..)))-)))).)...-.))..)))).....- ( -28.30)
>DroYak_CAF1 1023 94 + 1
GCCUUCGCUGGCCAUUUGAUUGUACUUUUUGUGGGCCGCCUGGCGGCUCAGAAGAAUGCGUGUUAAUAUUGCCUAAUGAUUUUUGAGU---C---------GUCAU-
.........(((...(((((((((.(((((.((((((((...)))))))).))))))))).)))))....)))..((((((....)))---)---------))...- ( -27.30)
>DroMoj_CAF1 4962 88 + 1
ACCCACUCUGUCCAUUUGAUUGUACUUUCUGUGGGCCGCCUGGCGGCUCAGAAGACUUCGCGUUGACAUUGUACAAUAACG-UUAAU------------------CG
....((..((((.((.(((..((.((((...((((((((...)))))))))))))).))).)).))))..)).........-.....------------------.. ( -22.30)
>DroAna_CAF1 1020 94 + 1
ACCUUCAGUGGCCCUUUGAUUGUAUUUUUUGUGGGCCGCUUGGCGGCUCAGAAGAUUGCACGUUUCUGUUGUUCAAUAGUUUUUGAGU---C---------GCCAC-
......((((((((...((........))...))))))))(((((((((((((.((((.(((.......))).))))...))))))))---)---------)))).- ( -38.30)
>DroPer_CAF1 4530 93 + 1
GCCAACUCUGGCCCUUUGAUUGUAUUUUCUCUGGGUCGCCUGGCGACUCAGACGACCGCACGUUAAUGUUGUACAAUAAUC-UUGAGC---U---------GAGGC-
.....(((.(((.(...((((((......((((((((((...))))))))))..((.(((......))).))...))))))-..).))---)---------)))..- ( -26.90)
>consensus
ACCCACACUGGCCAUUUGAUUGUACUUUUUGUGGGCCGCCUGGCGGCUCAGAAGAAUGCACGUUAACAUUGUACAAUAAUU_UUGAGU___C_________GCCAC_
........(((.((.((((((((...((((.((((((((...)))))))).))))..))).)))))...)).)))................................ (-16.71 = -16.60 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:59 2006