Locus 6991

Sequence ID 3R_DroMel_CAF1
Location 18,431,517 – 18,431,624
Length 107
Max. P 0.888345
window11333

overview

Window 3

Location 18,431,517 – 18,431,624
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 83.08
Mean single sequence MFE -29.87
Consensus MFE -22.78
Energy contribution -23.70
Covariance contribution 0.92
Combinations/Pair 1.32
Mean z-score -2.03
Structure conservation index 0.76
SVM decision value 0.95
SVM RNA-class probability 0.888345
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18431517 107 - 27905053
GCAACACAACAGAACACCGCAGCAAACUGAGUCCCAGAAGAUCUUGCGCCAGGCCAAAUUGGUUGACACCGAGAUUCUGGGCGGACUGCGGAACGAACAACACAACA
................((((((....(((...((((((..((((((.....((((.....)))).....))))))))))))))).))))))................ ( -30.00)
>DroSec_CAF1 22641 107 - 1
GCAACACAACAGAACACCGCAGCAAACCGAGUCCCAGAAGAUUUUGCGCCAGGCCAAACUGGUUGACACCGAGAUUCUGGGCGGUCUGCGGAACGAACAACACAACA
................((((((...((((...(((((((..((.((((((((......)))).)).))..))..)))))))))))))))))................ ( -33.60)
>DroSim_CAF1 17130 107 - 1
GCAACACAACAGAACACCGCAGCAAACCGAGUCCCAGAAGAUCUUGCGCCAGGCCAAACUGGUUGACACCGAGAUUCUGGGCGGUCUGCGGAACGAACAACACAACA
................((((((...((((...(((((((..((.((((((((......)))).)).))..))..)))))))))))))))))................ ( -35.40)
>DroEre_CAF1 17467 107 - 1
GCAACACAACAGAACUCCGCAGCACACUGAGUCCCAGAACAGCUUGUGCCAGGCCAAAUUGGUCGACACCGAGAUCCUGGGCGGACUGCGGAACGAACAACACAACA
...............(((((((....(((...(((((.....((((((...((((.....))))..)).))))...)))))))).)))))))............... ( -29.30)
>DroWil_CAF1 16117 102 - 1
GCAACACAACAUAACAAUGCAACAAAGACUGUCCCAGAACACUUUGUUCCAAAGGAAACCGCUUGAAACAGAUGUCCUGGGCAAGCUGUU-AAGGAA---CACAAU-
(((..............))).....((..((.(((((.(((.((((((.(((.(....)...))).))))))))).)))))))..))...-......---......- ( -21.04)
>consensus
GCAACACAACAGAACACCGCAGCAAACCGAGUCCCAGAAGAUCUUGCGCCAGGCCAAACUGGUUGACACCGAGAUUCUGGGCGGACUGCGGAACGAACAACACAACA
................((((((....(((...((((((..((((((.....((((.....)))).....))))))))))))))).))))))................ (-22.78 = -23.70 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:58 2006