Locus 6990

Sequence ID 3R_DroMel_CAF1
Location 18,431,067 – 18,431,167
Length 100
Max. P 0.613745
window11332

overview

Window 2

Location 18,431,067 – 18,431,167
Length 100
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 77.15
Mean single sequence MFE -38.40
Consensus MFE -21.44
Energy contribution -22.58
Covariance contribution 1.14
Combinations/Pair 1.29
Mean z-score -1.65
Structure conservation index 0.56
SVM decision value 0.16
SVM RNA-class probability 0.613745
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18431067 100 - 27905053
UGGAGAGGGCUGCUGCGCCUGCAGCUCCAGCUGCUGCUGAUCAGCCAGCAUCUUGGCGCUCAAAAUGCUCACAUAAGUGCGGUAGCGACGAAGCUAAA-AA----
(((...(.(((((((((((.(((((....)))))(((((......)))))....)))((.......))..........))))))))..)....)))..-..---- ( -35.70)
>DroVir_CAF1 14960 101 - 1
CGGGGCUGCCUGCUGACAUUGCAGCUCCAUUGGCUGCUGAUCGGUGAGCAGUUUGGCGGUUAAAAUGUUUACAUAAGCCUCGUAGCGACGGAGCUGAUAAA----
(((((((...((..((((((..(((((((..(((((((.(....).)))))))))).))))..))))))..))..)))))))((((......)))).....---- ( -36.20)
>DroPse_CAF1 18792 101 - 1
CUGCGUGGGCUGCAGCGCCUGCAGCUCCAAUUGCUGCUGAUCGGCUAGCAUUUUGGCGCUAAGUAUGCUCACAUAGGUGCGGUAGCGACGCAGCUGUAGGA----
((((((.(.((((.(((((((.(((.((((.(((((((....))).))))..)))).)))..((......)).))))))).))))).))))))........---- ( -43.40)
>DroYak_CAF1 17284 100 - 1
UGGAGACGGCUGCUGCGCCUGCAGCUCCAACUGCUGCUGGUCAGCUAGCAUCUUGGCGCUCAGGAUGCUCACAUAGGUGCGAUAGCGACGAAGCUAAA-GA----
.(....).((((.((((((((((((.......)))))......(..(((((((((.....)))))))))..)..))))))).))))............-..---- ( -38.00)
>DroAna_CAF1 16464 104 - 1
CGGCGAUGGCUUCUGCGCCUGCAGUUCCAGCUGUUGUUGAUCCUCCAGUAGCUUGGCGCUCAGAAUGCUAACAUAUGUGCGAUAGCGACGUAGCUGAA-UAGGAA
(((((((((((.((((....))))....))))))))))).((((....((((((((((.......))))))..(((((((....)).)))))))))..-.)))). ( -33.70)
>DroPer_CAF1 17299 101 - 1
CUGCGUGGGCUGCAGCGCCUGCAGCUCCAAUUGCUGCUGAUCGGCUAGCAUUUUGGCGCUAAGUAUGCUCACAUAGGUGCGGUAGCGACGCAGCUGUAGGA----
((((((.(.((((.(((((((.(((.((((.(((((((....))).))))..)))).)))..((......)).))))))).))))).))))))........---- ( -43.40)
>consensus
CGGCGAGGGCUGCUGCGCCUGCAGCUCCAACUGCUGCUGAUCGGCUAGCAUCUUGGCGCUCAGAAUGCUCACAUAGGUGCGGUAGCGACGAAGCUGAA_GA____
........(((((.((((((..(((.((((.(((((((....))).))))..)))).)))....(((....))))))))).)))))................... (-21.44 = -22.58 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:57 2006