Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,493,184 – 2,493,287 |
Length | 103 |
Max. P | 0.993571 |
Location | 2,493,184 – 2,493,287 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -20.93 |
Energy contribution | -21.27 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.10 |
Mean z-score | -3.00 |
Structure conservation index | 0.86 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2493184 103 + 27905053 UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU-UCUGUUUGUUCUACUUGUGUUUUCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCCGAUAG ....((((((....)))))).((...(((((((((..(-((.((.((.((((...(((.....)))....)))).)).)).)))...)))))))))..)).... ( -24.30) >DroSec_CAF1 23042 103 + 1 UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU-UCUGUUUAUUCUACUUGUGUUUUCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCCGAUAG ....((((((....)))))).((...(((((((((..(-((.((.((.((((...(((.....)))....)))).)).)).)))...)))))))))..)).... ( -25.10) >DroSim_CAF1 20672 103 + 1 UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU-UCUGUUUAUUCUACUUGUGUUUUCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCCGAUAG ....((((((....)))))).((...(((((((((..(-((.((.((.((((...(((.....)))....)))).)).)).)))...)))))))))..)).... ( -25.10) >DroEre_CAF1 21934 102 + 1 UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGGUU-UCUGUUUAUUCUACUUGUGUU-UCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCUGAUAG ....((((((....))))))..(((.((((((((((.(-((.((.((.((((...(((..-..)))....)))).)).)).)))..))))))))))...))).. ( -27.50) >DroYak_CAF1 21673 103 + 1 UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU-UCUGUUUAUUCUACUUGUGUUUUCCAUUCCAUAGAUUACGCUGAAUUCCGGUAGCCAUCUGAUAG ....((((((....))))))..(((.(((((((((..(-((.((.((.((((...(((.....)))....)))).)).)).)))...)))))))))...))).. ( -23.90) >DroAna_CAF1 19394 97 + 1 UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUUUUGUGUUUAUUUUAU-------UUCUAUUUUUUAGAUUACGCUGAAUUCCGGUAGCCUUCCGAUAA ....((((((....)))))).((....((((((((.(((.((((.........-------.((((.....))))..)))).)))...))))))))...)).... ( -20.60) >consensus UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU_UCUGUUUAUUCUACUUGUGUUUUCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCCGAUAG ....((((((....)))))).((...(((((((((....((.((.((.((((...(((.....)))....)))).)).)).))....)))))))))..)).... (-20.93 = -21.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:44 2006