| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,430,263 – 18,430,356 |
| Length | 93 |
| Max. P | 0.704612 |
| Location | 18,430,263 – 18,430,356 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.21 |
| Mean single sequence MFE | -11.18 |
| Consensus MFE | -9.04 |
| Energy contribution | -8.98 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18430263 93 - 27905053 AAAUUACACU-----UCCCUCCAUUUCACUUAUAUAUAGGUCUUACUCUUCUUAAAGCUGCUGUCAUAGCAGCAUUUACGCAUCACAUAGCCUUUUUU ..........-----......................((((...........(((((((((((...))))))).))))...........))))..... ( -12.25) >DroSec_CAF1 21390 93 - 1 AAAUUACACU-----UCCCUCCAUUUCACUUAUAUAUAGGUCUUACUCUUCUUAAAGCUGCUGUCAUAGCAGCAUUUACGCAUCACAUAGCCUUUUUU ..........-----......................((((...........(((((((((((...))))))).))))...........))))..... ( -12.25) >DroSim_CAF1 15879 93 - 1 AAAUUACACU-----UCCCUCGAUUUAGUUUUUAUAAUGGUCUUACUCUUCUUAAAGCUGCUGUCAUAGCAGCAUUUACGCAUCACAUAGCCUUUUUU ..........-----.......................(((...........(((((((((((...))))))).))))...........)))...... ( -11.55) >DroEre_CAF1 16222 93 - 1 AAAUUAUACUG---AUUUGUUCAUUUCACUUUUAU--AAGUCUUACUUUUCUUAAAGCUGCUAUCAUAGCAGCAUUUACGCAUCACAUAGCCUUUUUU ..........(---((((((.............))--)))))..............(((((((...)))))))......((........))....... ( -13.42) >DroWil_CAF1 14858 89 - 1 AAAUGAAAAA-----U-UG-UAAUUUAAAUUUAAU--UGGACUAACUCUUUUUGUAGCUGCUAUCAUAGCAACAUUUUCGCAUCACAUAACCCUUCUU ..(((..(((-----.-((-(..........(((.--.(((.....)))..)))..((((......)))).))).)))..)))............... ( -7.20) >DroYak_CAF1 16471 96 - 1 AAAUUACACAUCCUUUUCCUUCAUUUUACUUUUAU--AAGUCUAACUUUUCUUAAAGCUGCUGUCAUAGCAGCAUUUACGCAUCACAUAGCCUUUUUU ...........................((((....--))))...............(((((((...)))))))......((........))....... ( -10.40) >consensus AAAUUACACU_____UCCCUCCAUUUCACUUUUAU__AGGUCUUACUCUUCUUAAAGCUGCUGUCAUAGCAGCAUUUACGCAUCACAUAGCCUUUUUU ........................................................(((((((...)))))))......................... ( -9.04 = -8.98 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:53 2006