| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,425,862 – 18,425,966 |
| Length | 104 |
| Max. P | 0.971160 |
| Location | 18,425,862 – 18,425,966 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.43 |
| Mean single sequence MFE | -51.10 |
| Consensus MFE | -25.17 |
| Energy contribution | -25.78 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971160 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18425862 104 - 27905053 GUAUGU------CCGUUC-------CCGUUUCCGUUCGCCGCCUUUGUCGGAAUCUGCGAUGGGCGUGGCCGCUUAUUCUGCGGCGAAUGGAGAACGGGCACGGGCUUGGGUACGGC ((((((------((((.(-------((((((((((((.((((((..((((.......))))))))).)(((((.......))))))))))))).))))).))))))....))))... ( -52.20) >DroPse_CAF1 10618 110 - 1 UUGUGUGCACUCCCGUUACCGUU-------GCCGUUCGAUGCCUUUGUGGGUAUCUGCGAGGAGCGUGGCCGCUUAUUUUGUGGCGAAUGGAGCACGGGCACGGGCUUGGGCGCCGG ..((((.((..(((((..((((.-------.((((((.(((((((((..(....)..))))).)))).(((((.......)))))))))))...))))..)))))..)).))))... ( -51.70) >DroEre_CAF1 11868 110 - 1 GUGUGU------CCGUUCCCGUU-CCCGUUUCCGUUCGCCGCCUUUGUCGGAAUCUGCGAAGGGCGUGGACGCUUAUUCUGCGGCGAAUGGAGUACGGGCACGGGCUUGGGUACGGC .(((..------(((..(((((.-(((((((((((((((((((((((.(((...))))))))((((....))))......))))))))))))).))))).)))))..)))..))).. ( -61.40) >DroWil_CAF1 10218 111 - 1 GUGUGU------CUGCUGCUGCUGGGCAUUUCCAUUCGCUGCCUUUGUGGGUAUUUGCGAGGGACGUGGCCGUUUAUGUUGUGGCGAAUGAAGAACGGGCACCGGCUUUGGAUUGGC ....((------(..(((..(((((((..((((((((((..((((((..(....)..)))))(((((((....))))))))..)))))))..)))...)).)))))..)))...))) ( -37.30) >DroAna_CAF1 11144 104 - 1 GGAUGA------CCGUUG-------CCAGUGCCGUUCGAAGCCUUCGUGGGGAUCUGCGAGGGUCGUGGCCGCUUGUGCUGCGGCGAAUGCAGCACCGGCACCGGCUUGGGGGCGUU ......------.((((.-------((((.((((..((..(((((((..(....)..)))))))..))((((...((((((((.....))))))))))))..)))))))).)))).. ( -51.60) >DroPer_CAF1 11401 116 - 1 UUGUGUGCACUCCCGUUACCGUU-GCCGUUGCCGUUCGAUGCCUUUGUGGGUAUCUGCGAGGAGCGUGGCCGCUUAUUUUGUGGCGAAUGGAGCACGGGCACGGGCUUGGGCGCCGG ..((((.((..(((((..((((.-((.....((((((.(((((((((..(....)..))))).)))).(((((.......))))))))))).))))))..)))))..)).))))... ( -52.40) >consensus GUGUGU______CCGUUACCGUU__CCGUUGCCGUUCGAUGCCUUUGUGGGUAUCUGCGAGGGGCGUGGCCGCUUAUUCUGCGGCGAAUGGAGCACGGGCACGGGCUUGGGCGCGGC ............((.................((((((....(((((((((....))))))))).....(((((.......)))))))))))....(((((....)))))))...... (-25.17 = -25.78 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:52 2006