Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,418,908 – 18,419,017 |
Length | 109 |
Max. P | 0.952820 |
Location | 18,418,908 – 18,419,017 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.76 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -18.99 |
Energy contribution | -19.38 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.11 |
Mean z-score | -2.26 |
Structure conservation index | 0.60 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.952820 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18418908 109 + 27905053 GCUCCGUCGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAGC--AGUGGCAGUGGCUA---AAACAGUCAAAGAAAUAAUAA----GAACAAUAAGUGCAUAAGGCACUCAGCU--A (((..((((((((.((((((((...((....)).)))))))).))--))))))..(((((.---....)))))............----........(((((.....))))).))).--. ( -38.70) >DroVir_CAF1 4523 110 + 1 GC----ACGCUGCGGUUCGUUGCACGCCACGGCACAGCGAACAGCGCAACAACAAUAACAA---CAAGCAUUUACGAAAUAAUAAGUUAGAACAAUGAGUGCAUAAGGCACAG-GCA--C ((----..(((((.((((((((...((....)).)))))))).))................---...(((((((.....(((....)))......)))))))....)))....-)).--. ( -25.90) >DroPse_CAF1 4858 112 + 1 GCUCCAACGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAGC--AU--ACAGCCACUACAACAACAAUCAAAGAAAUAAUAA----GAACAAUAAGUGCAUAAGGCACUCAGUGGCU ........(((((...((((((...((....)).)))))))))))--..--..(((((((..............(....).....----........(((((.....))))).))))))) ( -31.70) >DroEre_CAF1 4981 108 + 1 GCUCCGCCGCUGCGGUUCGUUGCACGCCACGGCACAGCGAACAGC--AGUAGCAGUGGCUA---AAACAGUCAAAGAAAUAAUAA----GAACAAUAAGUGCAUA-GGCACUCAGCU--A (((..((..((((.((((((((...((....)).)))))))).))--))..))..(((((.---....)))))............----........(((((...-.))))).))).--. ( -36.10) >DroAna_CAF1 4291 96 + 1 UCUCCAUCGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAG-------GCACCGGC----------ACCGAAGAAAUAAUAA----GAACAAUAAGUGCAAGAGCCACUCUACA--- .............(((((.(((((((((...((.......)).)-------))..((..----------..))............----.........)))))))))))........--- ( -24.30) >DroPer_CAF1 5701 112 + 1 GCUCCAACGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAGC--AU--ACAGCCACUACAACAACAAUCAAAGAAAUAAUAA----GAACAAUAAGUGCAUAAGGCACUCAGUGGCU ........(((((...((((((...((....)).)))))))))))--..--..(((((((..............(....).....----........(((((.....))))).))))))) ( -31.70) >consensus GCUCCAACGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAGC__AG__ACAGCGACUA___CAACAAUCAAAGAAAUAAUAA____GAACAAUAAGUGCAUAAGGCACUCAGCA__A ........((((..((((((((...((....)).))))))))........................................................((((.....)))).)))).... (-18.99 = -19.38 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:47 2006